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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGATTCCTGGCATTGATATCCACTTGAATGATGGAGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGgtcacattcatgccctatttgcattagtaattcttcttaatgttgtaaagtgttaaaaaaatctgttttctattgtgtggctcatttttctagtgttctatttatttatactgtatgcag

Basic information

species Glycine max
transcript GLYMA13G42070.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42070.2 (Glycine max), 5'ss of exon 4
lower sequence: AT2G43430.2 (Arabidopsis thaliana), 5'ss of exon 3
GAAAGGATTCCTGGCATTGATATCCACTTGAATGATGGAGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGgtcacattcatgccctatttgcattagtaattcttcttaatgttgtaaa-gtgttaaaaaaatctgttttctattgtgtggctcatttttctagtgttctatttatttatactgtatgcag
||  |||||||||| ||||| || |   |||| ||| | ||||||||||||||||||||||||||||| ||  || | ||||| ||||| ||||| | ||||    |   |||| ||    |    ||||        |||  |   ||    |  | | | ||   | |       ||     |  ||  | |||    |  ||||  ||          
GATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGATAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGgtt-tgtagctgccataacctctactgtaa--------aatactaagaacacatctatacagtcaaatattgccaacgttagaaacctt--tggtggatcacatattagta----------

upper sequence: GLYMA13G42070.2 (Glycine max), 5'ss of exon 4
lower sequence: AT2G31350.2 (Arabidopsis thaliana), 5'ss of exon 4
GAAAGGATTCCTGGCATTGATATCCACTTGAATGATGGAGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGgtcacattca--tgccctatttgcattagtaattcttctta-atgttgtaaagtgttaaaaaaatctgttttctattgtgtggctcatttttctagtgttctatttatttatactgtatgcag
||  |||||||||| ||||||||   |||||| ||||| || || |||||||||||||||||||| || | ||| ||||| || ||||| || ||   ||||    |  |  |  | ||||  | || | |  | |   |  ||||| |    |   |   ||  || |  | |  |   |    || |||      |||                       
GACCGGATTCCTGGAATTGATATGGCCTTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCTGGCCACACAAAAGgttgtttataattctcatattaacttttggagctttgaatgcatgttcttgcattccagttaagcctttgctttgctaaatattccactttaaagtagtt-----------------------

upper sequence: GLYMA13G42070.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0102g01180.t01 (Vitis vinifera), 5'ss of exon 6
GAAAGGATTCCTGGCATTGATATCCACTTGAATGATGGAGATAAGTGGATGTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGgtcacattcatgccctatttgcattagtaattcttcttaatgttgtaaagtgttaaaaaaatctgttttctattgtgtggctcatttttctagtgttctatttatttatactgtatgcag
||  | |||||||| ||||||||    ||||| |||||||| |||||||||||||| ||||||||||||  |||||| || || |||||||||||||||||||| |||    | ||| |   ||||| || | | ||  || | |||   | || ||| |     |  | |         || ||      |||    |  ||                 
GATCGAATTCCTGGAATTGATATAGTTTTGAAAGATGGAGACAAGTGGATGTTTGCAGGCCATGAGGTGGTTGTAATTGAAACTCCTGGTCATACCCGAGgtcatatttcatcactaatcatattagaaaatat-ctggatttcgta--cttttgaaacatgtgatcatttcaaaatcaactgatgaaaacagtacatttctt-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314674|gb|GR829667.1|GR829667
EST:     GTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAG                         GCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACA
genomic: GTTTGCTGGCCATGAGGTGCGTGTAATGGACACGCCTGGTCATACCCGAGgtcacattca ... ctgtatgcagGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACA
EST: gi|31309192|gb|CD394395.1|CD394395
EST:     GTGTAATGGACACGCCTGGTCATACCCGAG                         GCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACA
genomic: GTGTAATGGACACGCCTGGTCATACCCGAGgtcacattca ... ctgtatgcagGCCATATAAGCTTCTATTTTCCTGGATCTGGGGCAATTTTTACTGGAGACA