1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGAGAAAGAGATTGGAGCAAAATTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatacttttaaatttaatatctcagtagataaaaaaagtcactattttacacttgaaatctcaagccactttaattttcaaaactattattatgagaagtgcattatcagtgttattcatatccgaaggaataaattctttgatcatcttccagagatgagtagtaaccaaagatttctgtgattcag
species | Glycine max |
transcript | GLYMA13G23790.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|17401257|gb|BM178039.1|BM178039
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|5688024|gb|AI941039.1|AI941039
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: NCAA-GTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACANG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCANGAAAAGTGTCTTGATEST: gi|42723252|gb|CK769151.1|CK769151
genomic: -CAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: GTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|214008422|gb|DB989988.1|DB989988
genomic: GTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTTGGCGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|42723195|gb|CK769094.1|CK769094
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|4260047|gb|AI416543.1|AI416543
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: GTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|6341426|gb|AW164250.1|AW164250
genomic: GTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCAAAGTGCAAGAAAGGTGTCTGGATEST: gi|11688868|gb|BF596544.1|BF596544
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|298164748|gb|HO014393.1|HO014393
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAACTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAEST: gi|7232927|gb|AW568278.1|AW568278
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGA
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|16995760|gb|BM085132.1|BM085132
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|209715917|gb|BW650930.1|BW650930
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|26060128|gb|CA803042.1|CA803042
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|13790807|gb|BG653398.1|BG653398
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|7232967|gb|AW568318.1|AW568318
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|6200999|gb|AW153099.1|AW153099
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGATEST: gi|11687793|gb|BF595469.1|BF595469
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
EST: NCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAN GGGATTGTTTGACAAAAATAGAAATTG-GAAGTGCAAGGAAGGTGTCTTGAEST: gi|7029106|gb|AW458880.1|AW458880
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAA-TTGCGAAGTGCAAGAAAGGTGTCTTGA
EST: NCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAG GGGATTGGTTGACAAAAATAGAATTGCGAAGTGCAGGAAAGGTGTCTTGAT
genomic: CCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatactttt ... tgtgattcagGGGATTGTTTGACAAAAATAGAATTGCGAAGTGCAAGAAAGGTGTCTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGAAAGAGATTGGAGCAAAATTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTAATTGTTATCAACACCCCTCTCACTGAGCAGACAAGgtatacttttaaatttaatatctcagtagataaaaaaagtcactattttacacttgaaatctcaagccactttaattttcaaaactattattatgagaagtgcattatcagtgttattcatatccgaaggaataaattctttgatcatcttccagagatgagtagtaaccaaagatttctgtgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG