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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAGTGCTGCAGCAGGGCCTGTTGGGAGAGTGCTTGAGGCAGATATTCGTGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatggtgattttattttttttggcatactgctggatctttttgcatgtaatgccaattacattttttaatttcatttaaatgcatgggcatattt...

Basic information

species Glycine max
transcript GLYMA13G17500.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17500.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g17130.1 (Oryza sativa), 5'ss of exon 4
TGTAGTGCTGCAGCAGGGCCTGTTGGGAGAGTGCTTGAGGCAGATATTCGTGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatggtgattttattttttttggcatactgctggatctttttgcatgtaatgccaattacattttttaattt--catttaaatgcatgggcatattt----
|  ||||||||||||||||||||||| |||||||| ||||| ||  |  | |||||||| | |||||| ||  | ||||| || || || ||||| |||||||||  |    || | ||  |  ||   |  |  |     ||  |||||| | | | || |  |  ||| || |      | ||||| | | || | |       
TTAAGTGCTGCAGCAGGGCCTGTTGGTAGAGTGCTAGAGGCTGACTTGAGAGCTGGTGATAAAGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAGgtaatctttcc-atctgatcgtagttcttaagcctcc----ctagttgcat-tgaagtcagtctctgtttctattggagtgtataaattcgtaggaagaaaatatg

upper sequence: GLYMA13G17500.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G43230.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTAGTGCTGCAGCAGGGCCTGTTGGGAGAGTGCTTGAGGCAGATATTCGTGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaatt---atggtgattttattttttttggcatactgctggatctt-tttgcatgtaatgccaattacattttttaatttcattt-aaatgcatgggcatattt-----------------------------
|| ||||| |||||||||||| | ||||||||| | ||||| ||  |||| |||||||||| |||||||||  | || || ||||||||  |||| ||||||  |    ||    | || ||   ||  |   |     |   | |  ||||     | |   |  |  ||  |  |     | || ||||| |     |||                                
TGCAGTGCAGCAGCAGGGCCTATCGGGAGAGTGTTGGAGGCTGACCTTCGAGCTGGTGACAAAGGCTCTGGTGTCTGCTATACTTACAGCCGCAGCAAAGgttttccccatctcaacttcatgccttaagttttctctttatctataatttggccagactcgtagctcaataatacagaggaagttgaaatgtaaatctataacctgagagaagttgttgtgttgtgtgaacag

upper sequence: GLYMA13G17500.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g00400.t01 (Vitis vinifera), 5'ss of exon 4
TGTAGTGCTGCAGCAGGGCCTGTTGGGAGAGTGCTTGAGGCAGATATTCGTGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgta----attatggtgattt-tattttttttggcatac-tgctggatctttttgcatgtaatgccaattacattttttaatttcatttaaatgcatgggcatattt----------------
|| |||||||| ||||| ||||| || |||||| | || |||||| | || ||||| || ||||| |||||||||||||| || |||||||| || |||||||    ||  ||| ||| | ||| | | |    || | | || ||    |||| || |   |  | || ||  ||||         ||  || |||  |   |||                
TGCAGTGCTGCTGCAGGACCTGTAGGAAGAGTGTTGGAAGCAGATCTCCGAGCTGGAGATAGAGGTTCTGGCATGTGTTATACATACAGTTGTAGCAAAGgtattgtatcctggagatctatatatatatatatattcatacttgaatgctttgtatttgggg--agtttcaagttttggggagtagtagctg-atgaccgattttgttgggaggggaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321225|gb|FK014315.1|FK014315
EST:     TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
EST: gi|209708078|gb|BW671094.1|BW671094
EST:     TACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
EST: gi|9204794|gb|BE331018.1|BE331018
EST:     TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
EST: gi|192321226|gb|FK014316.1|FK014316
EST:     TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
EST: gi|14125149|gb|BG789587.1|BG789587
EST:     TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
EST: gi|308098124|gb|HO761295.1|HO761295
EST:     TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTTTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
EST: gi|22933303|gb|BU550442.1|BU550442
EST:     TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
EST: gi|192319363|gb|FK009905.1|FK009905
EST:     TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
EST: gi|254343584|gb|GR857340.1|GR857340
EST:     TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
EST: gi|192319364|gb|FK009906.1|FK009906
EST:     TGCTGGTGACAGAGGTTCTGGCATGTGTTACACTTACAGTTGCAGTAAAG                         GTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG
genomic: TGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGgtaattatgg ... caaactgtagGTGCATTTGTGGGAGTGTCTTTGGAAGGAAATATAGTTGCAACCAGGATGG