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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTTCCAAAGgtttgtttcttgttcaagttgtggagaaatctaaaaatatcctaaactttctcctcattaatatccctcaattttctcctaattacatttaatacataat...

Basic information

species Glycine max
transcript GLYMA13G11700.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G11700.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G339336_T01 (Zea mays), 5'ss of exon 4
TGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTTCCAAAGgtttgtttcttgttcaagttgtggagaaatctaaaaatatcctaaactttc--tcctcattaatatccctcaattttctcctaattacatttaatacataat
 ||| | ||||| ||   |  || ||||||  ||||  | |||||      || || ||||||||||||||| ||||| || ||||| |||||||| ||||| |  |  |  |  ||| | | |  |  | | |     || ||| |||    |   ||| || ||     ||     |   ||       |  | |  |||
AGAGGAGCTTGGCAAGACATCTCATGTTGATGCAAGGTTACCTTCAGGCTCTGATACTGCAGTTATCATGTATACAAGCGGAAGTACTGGTCTTCCCAAGgtatactgttgatcaaagattttgcaattttttatgtgttcataatcttgtaatttccatgaacataaacaaaaaagttg--aaaggagactggtgctgaat

upper sequence: GLYMA13G11700.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G079236_T01 (Zea mays), 5'ss of exon 5
TGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTTCCAAAGgtttgtttcttgttcaagttgtggagaaatctaaaaatatcctaaactttc--tcctcattaatatccctcaattttctcctaattacatttaatacataat
 ||| |  | || ||   |  |  ||||||  ||||  | ||||| |    || || ||||||||||||||| ||||| || ||||| |||||||| ||||| |  |  |  |  ||| | | |  |  ||| |     || ||| |||    ||   || || ||   | ||  |  |   |    |   |  |  |||  
AGAGGAGTTAGGCAAGACATCTAGTGTTGATGCAAGGTTACCTTCAAGCTCTGATACTGCAGTTATCATGTATACAAGCGGAAGTACTGGTCTTCCCAAGgtatactgttgatcaaagattttgcaatttcttatgcattcgtaatcttgtaatctgaataaacatgaataaaaatgataaaaggctctggttctgtata--

upper sequence: GLYMA13G11700.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0057g01270.t01 (Vitis vinifera), 5'ss of exon 4
TGAGAAACTTGGGAAAGAAAGTCCTGTTGAGCCAAGCCTGCCTTCCAAGAATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTTCCAAAGgtttgtttcttgttcaagttgtggagaaatctaaa--aatatcctaaactttctcctcattaatatccctcaattttctcctaat-tacatttaatacataat--
|||||||||||||||||||| ||||||| | ||||| ||||||||||||| ||  ||||| ||| ||||||| ||||| |||||||| ||||| |||||||||||||     ||  ||||   | |   |  | |  | |    || |  |||    ||| ||     ||||| | |     | | |    ||  ||  |     
TGAGAAACTTGGGAAAGAAAATCCTGTTCATCCAAGACTGCCTTCCAAGACTGACATTGCTGTTGTCATGTATACAAGCGGCAGTACCGGTCTGCCAAAGgtttgttctagattttagtttcagtgtcttgcatattagttatttacatattccaagcatcaa-----ctcaaatataaaacattgtgagcttgctaattggcct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529688|gb|EH257822.1|EH257822
EST:     ATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTGCCAAAG                         GGTGTCATGATTACTCACGGCAACATTGTAGCCACTACAGCAGCTGTTATG
genomic: ATGCTATTGCAGTTATCATGTACACAAGTGGCAGTACAGGTCTTCCAAAGgtttgtttct ... aatcattcagGGTGTCATGATTACTCACGGGAACATTGTAGCGACTACAGCAGCTGTTATG