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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTAAGAAGTGGAATGCGAAGGTTTCAGACTTTGGCCTCGCAAAACTCCTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtattatcttccttgtctattgttgctccattgcttgctcaaagcattattggtcatgacgggtttccatcaattcccttaattgttcttcttttggcag

Basic information

species Glycine max
transcript GLYMA11G05830.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05830.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0031g00480.t01 (Vitis vinifera), 5'ss of exon 4
TCAGTAAGAAGTGGAATGCGAAGGTTTCAGACTTTGGCCTCGCAAAACTCCTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtattatcttccttgtctattgttgctccattgcttgctcaaa-gcattattggtcatgacgggtttccatcaattcccttaattgttcttcttttggcag
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TTGATAAGCAGTGGAATCCCAAGGTTTCAGACTTTGGCCTTGCCAAGCTCCTTGGCTCAGAGCACAGCTATGTAACAACCCGAGTGATGGGAACATTTGGgtatgtatgatctttctccttccctcttccccttcccttctctcctgtgaagaagaggtggtgacta-tttgtttctgtttttgtag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481467|gb|BG510810.1|BG510810
EST:     CTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGG                         ATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
genomic: CTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtatta ... cttttggcagATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
EST: gi|10234344|gb|BE803232.1|BE803232
EST:     CTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGG                         ATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
genomic: CTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtatta ... cttttggcagATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
EST: gi|207822203|gb|GD793564.1|GD793564
EST:     TTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGG                         ATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
genomic: CTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtatta ... cttttggcagATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
EST: gi|207791527|gb|GD763238.1|GD763238
EST:     TTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGG                         ATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
genomic: CTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtatta ... cttttggcagATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
EST: gi|58016385|gb|CX703127.1|CX703127
EST:     TGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTNGG                         ATATGTTGCTCCTGAATACGCGAGTACTGGCATG-TGNAATGAACGGAGTG
genomic: TGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtatta ... cttttggcagATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTG-AATGAACGGAGTG
EST: gi|207828657|gb|GD800502.1|GD800502
EST:     CTATATCACAACCCGTGTCATGGGTACATTTGG                         ATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
genomic: CTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtatta ... cttttggcagATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
EST: gi|26048897|gb|CA785350.1|CA785350
EST:     CTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGG                         ATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA
genomic: CTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtatta ... cttttggcagATATGTTGCTCCTGAATACGCGAGTACTGGCATGTTGAATGAACGGAGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGTAAGAAGTGGAATGCGAAGGTTTCAGACTTTGGCCTCGCAAAACTCCTTGGCTCTGACAGCAGCTATATCACAACCCGTGTCATGGGTACATTTGGgtttgtattatcttccttgtctattgttgctccattgcttgctcaaagcattattggtcatgacgggtttccatcaattcccttaattgttcttcttttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT