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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTACCGGAGTCCTGACATGGGAGATGCTATCGAATTCTGTGTACATATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAGgtatgtgctgagtagtgtctgtctctgttgtcttgttataatttcttgttctatatctctgattgactgatactaataatgacctgacctcaatgcag

Basic information

species Glycine max
transcript GLYMA10G43050.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43050.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G78610.1 (Arabidopsis thaliana), 5'ss of exon 4
ACTATTACCGGAGTCCTGACATGGGAGATGCTATCGAATTCTGTGTACATATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAGgtatgtgctgagt--agtgtctgtctctgttgtcttgttataatttcttgttctatatctctgattgactgatactaataatgacctgacctcaatgcag
| |||||||| |||||||| |||||||||| |||||||||||   | || ||  |||| |||| ||| || ||   |||||| ||||| |||||   ||||||  |    | |   |  ||    | |      || | |||  |     |||| | | | | |||  |||       |  ||   |             
ATTATTACCGTAGTCCTGATATGGGAGATGGTATCGAATTCTCCATCCACATTACTACTCCAGCTGAGAAAATCATACTCATCAAACAGAGAATCACAAGgtacattgcaaatttggaatcacagtttcacaaattttaatacctgaaaattct-tgtatttcattacctgcattcgttgttgtgatag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16106406|gb|BI894146.1|BI894146
EST:     ATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAG                         TTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTGATTGTATA
genomic: ATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAGgtatgtgctg ... ctcaatgcagTTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTGATTGTATA