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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCATGACCAAAGTTTGACAAACTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctcattcttccggtcaagttgttcctttattgttgtatgtggaaggaacacaggatgtgctatccatcaacagatggcttgtgtaattattaca...

Basic information

species Glycine max
transcript GLYMA10G34570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34570.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G16300.1 (Arabidopsis thaliana), 5'ss of exon 3
AGAAGCATGACCAAAGTTTGACAAACTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaag---tctcattcttccggtcaagttgt-tcctttattgttgt-----atgtggaaggaacacaggatgtgctatccatcaacagatggcttgtgtaattattaca----
  | ||| || |||      ||||| | || || |||||  ||     ||  | ||      |  ||  | || ||  |||||||||||||||||||||||||||   ||| || | |    |  |  |   || | |||| |  |     || | |   |  |    |   || | ||  ||      | |  | | | | ||| | |    
GAAGGCAGGATCAACAGAAAACAAAGTTAGTCAATAGAGGTCGCATTGATGGAGTGACCTCCCAACTAACCCAAAAGTTGGATCCCATAGACTGGCTTACgtaagaaatcttatccctaatctttacctacgtcatatattatcttttactattttggctgctctatcgtcttgttgtcactctgattctagtat-tttgaatatcaaaaaag

upper sequence: GLYMA10G34570.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0340g00080.t01 (Vitis vinifera), 5'ss of exon 3
AGAAGCATGACCAAAGTTTGACAAACTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctcattcttccggtcaagttgttcctttattgttgtatgt---ggaaggaacacaggatgtgctatccatcaacagatggcttgtgtaattattaca----
 |||||| ||  |||    ||| || |||  ||||||||| ||     ||   ||| |||||||| |||| || | | ||||||||||||||||||||||||||||     ||||         || ||| || |  |||  | ||   | |||    |    || |  |||   |    | |  | |  |||  || ||| |    
GGAAGCAGGATAAAAAACAGACCAAGTCAATCATTAGAGAGCGAGTTGATGGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagt-----tcttttatgagtattcttcattaaaagtttgaagttttgaaagtcttattttat-ttttatttttatttatactgttcctgtg-tttttaaatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337377|gb|BI498033.1|BI498033
EST:     CAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTAC                         GTATGAGCCATATCTCTGGGAGAATGAGAGACAGTCTTACCTACGACATGC
genomic: CAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctca ... tatgttaaagGTATGAGCCATATCTCTGGGAGAATGAGAGACAGTCTTACCTACGACATGC
EST: gi|20498322|gb|BQ273252.1|BQ273252
EST:     CAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTAC                         GTATGAGCCATATCTCTGGGAGAATGAGAGACAGTCTTACCTACGACATGC
genomic: CAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaagtctca ... tatgttaaagGTATGAGCCATATCTCTGGGAGAATGAGAGACAGTCTTACCTACGACATGC