Sequence
atgc intronic sequence ATGC exonic sequenceTGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaatttttttaccattttgatttttcttttttgaatcatgcagttctctgctgattattatactgttaacaaaattatatag
Basic information
species | Glycine max |
transcript | GLYMA10G32610.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g56540.1 (Oryza sativa), 5'ss of exon 3
TGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgt----aatttttttaccattttgat--ttttcttttttgaatcatgcagttctctgctgattattatactgttaacaaaattatatag-----------
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GGATGTTCCATCGGTGGGGGGAAGGCTCATGCTTGTGGATATGGCTGGTTCTGAGAACATAGAAGCAGCAGGCCAAACTGGATTTGAAGCCAAAATGCAGgtctgtgatgtcactaatgcctgtataattttgtactttcagcaggacgtttttaaagttaccccttcaacaatgaatacctaatacagaagaataatta
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G062084_T01 (Zea mays), 5'ss of exon 3
TGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaatttttttaccattttgatttttcttttttgaatcatgcagttctctgctgattattatactgttaacaaaattatatag--------------------------------------------------------------------------------------------------------------------
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GGATGTCCCAGCTGTGGGAGGAAGGTTGATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCAGCAGGTCAAACGGGATTTGAAGCCAAGATGCAGgtgtgttatgcaacagattcttgtatgctttagcatctatgt-gttccaaacttccaattgcattctgaacaattgcttccaaggagtgtatttaatagatcgtttgacactgatcttgccacatgagttgtaccactcttaaaagcctataatattttattacatgtgcaatctataatgtcgctaaattttccacag
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G408308_T01 (Zea mays), 5'ss of exon 2
TGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaatttttttaccattttgatttttcttttttgaatcatgcagttctctgctgattattatactgttaacaaaattatatag------------------------------------------------------------------------------------------------------------------
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GGATGTCCCATCTGTGGGAGGAAGATTAATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCTGCAGGACAAACAGGATTTGAAGCCAAAATGCAGgtgtgttatgcaaccgattcatgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaattcttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgccacatgaatttgtaccactgtcaaaagccacatgtgcgatcaatagtgttgctacttttttcacag
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G150984_T02 (Zea mays), 5'ss of exon 3
TGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaatttttttaccattttgatttttcttttttgaatcatgcagttctctgctgattattatactgttaacaaaattatatag------------------------------------------------------------------------------------------------------------------
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GGATGTCCCATCTGTGGGAGGAAGATTAATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCTGCAGGACAAACAGGATTTGAAGCCAAAATGCAGgtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgccacatgaatttgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacag
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G029134_T01 (Zea mays), 5'ss of exon 2
TGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaatttttttaccattttgatttttcttttttgaatcatgcagttctctgctgattattatactgttaacaaaattatatag------------------------------------------------------------------------------------------------------------------
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GGATGTCCCATCTGTGGGAGGAAGATTAATGCTTGTGGACATGGCTGGATCTGAAAACATAGAAGCTGCAGGACAAACAGGATTTGAAGCCAAAATGCAGgtgtgttatgcaaccgattcctgtatgtttgtagcatctatgttttccaaacttccaattgcactctgaacaatacttttaagaagttgctctgtgtgtttaatagacagtcagtttgacactgatcttgcccaatgaattcgtaccactgtcaaaagccacacgtgtgatcaatagtgttgctacttttttcacag
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14330.1 (Arabidopsis thaliana), 5'ss of exon 3
TGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaatttttttac---cattttgatttttcttttttgaatcat-gcagttctc--tgctgattattatactgttaacaaaattatatag
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TGATGTGCCAACTGTTGGGGGAAGATTGATGCTTGTTGACATGGCTGGTTCTGAAAATATAGACCAAGCTGGGCAGACTGGATTTGAAGCTAAGATGCAAgtaatgtttcctctctcaatttgtttgattctactaaagttattgtagttatggatatcaactgacttatatctctcattattcaacag
upper sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0049g01350.t01 (Vitis vinifera), 5'ss of exon 3
TGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaatttttttaccattttgatttttcttttttgaatcatgcagttctctgctgattattatactgttaacaaaattatatag------------------------------------------------------------
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TGATGTCCCTACTGTGGGAGGAAGGTTGATGCTTGTTGACATGGCTGGTTCTGAAAATATTGAGCAAGCTGGTCAAACTGGATTGGAAGCAAAAATGCAGgtagaatgtgttgaaattctattattatatctttgagtat-cagttgtttgc-----attgtatttccagcaccattttgcttaaagttttgtttccgcttaatgatgagcagcgctaatgtatgcttctggcatgatcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7588672|gb|AW704462.1|AW704462EST: CAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAG ACTGCATAAATCAATCAAGGAAATATAGCTCTGAAGAGAGTGGTGGAGTCC
genomic: CAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaatttttt ... aattatatagACTGCAAAAATCAATCAAGGAAATATAGCTCTGAAGAGAGTGGTGGAGTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGTCCCAACTGTGGGAGGGCGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCCAAAATGCAGgtaatttttttaccattttgatttttcttttttgaatcatgcagttctctgctgattattatactgttaacaaaattatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG