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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGCGAAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAGgtaagctcaagcttcaaatagtcatgttacaccatgaaaatcttattatattaatcttatggtggtctttttttcttgcacatcaaaaaaggtataatattcttattttgatatgcattccag

Basic information

species Glycine max
transcript GLYMA10G32480.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32480.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
TCATGCGAAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAGgtaagctcaagcttcaaatagtcatgttacaccatgaaaatcttattatattaatcttatggtggtctttttttc---ttgcacatcaaaaaaggtataatattcttattttgatatgcattccag
| ||| | || || | ||| || ||||||||||| || || ||||||||||| |||||||||||||| ||||| |||||||| || |||||||| || ||||    | |||   |||  |   || | |    ||    | | ||| || ||  | || ||||| |||     ||   || |   || ||   | || |                           
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagtgaag---caatcaactatctgagtaaatttgtagcgtatcatttttcttttttggtgttctgaccatccatttacttctccaatttgttacag--------------------------

upper sequence: GLYMA10G32480.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 5
TCATGCGAAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAGgtaagctcaagcttcaaatagtcatgttacaccatgaaaatcttattatattaatcttatggtggtctttttttcttgcacatcaaaaaaggtataatattcttattttgatatgcattccag
| ||| | || || |  || || ||||| ||||||||||| ||| ||||||| |||||| | ||||| ||||| |||||||| || || || ||||| |||| || | ||||   | ||| | || |    | |      ||  ||| |  |  | || |    ||||||||||||   |  | | | |                                  
TTATGAGGAAAGACACCCTCACTGAAGACGAGGCCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCATTCATAAGCACAACTACATTCACAGgtcag-tgaagcagaatata-tgatttagttcta----gctcccattgttattttgttctaaacgtctttttttctccaatgtgatacag---------------------------------

upper sequence: GLYMA10G32480.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
TCATGCGAAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAGgtaagctcaagcttcaaatagtcatgttacaccatgaaaatcttattatattaatcttatggtggtctttttttcttgcacatcaaaaaaggtataatattcttattttgatatgcattccag
| |||||||||||||   |||| |||||||||||||| || |||||||| || || ||| | ||||| ||||| || ||||| |||||||||||||||||||  |   ||| ||    |  ||||| |      ||  || | |||   ||   ||| ||  ||   |                 || |||  ||||   |||   | |  ||   ||| |||
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagatt----ttatcatgattgtatgtgggaaccatat-gcatgcttctgatcatgactt-----------------aagaagcaataaccctctccatatt-tacttattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13563179|gb|BG551399.1|BG551399
EST:     GTCGATTCATAAACATAATTATATTCATAG                         AGATATCAAGCCTGACAATTTGCTGCTAGATAGAAATGGTCACATGAAATT
genomic: GTCGATTCATAAACATAATTATATTCATAGgtaagctcaa ... tgcattccagAGATATCAAGCCTGACAATTTGCTGCTAGATAGAAATGGTCACATGAAATT
EST: gi|192294765|gb|FG986614.1|FG986614
EST:     GAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAG                         AGATATCAAGCCTGACAATTTGCTGCTAGATAGAAATGGTCACATGAAATT
genomic: GAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAGgtaagctcaa ... tgcattccagAGATATCAAGCCTGACAATTTGCTGCTAGATAGAAATGGTCACATGAAATT
EST: gi|16346917|gb|BI972512.1|BI972512
EST:     GAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAG                         AGATATCAAGCCTGACAATTTGCTGCTAGATAGAAATGGTCACATGAAATT
genomic: GAGACTGTCTTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAGgtaagctcaa ... tgcattccagAGATATCAAGCCTGACAATTTGCTGCTAGATAGAAATGGTCACATGAAATT