Sequence
atgc intronic sequence ATGC exonic sequenceTATGAATGGAATGCTAGGACGCAAGTGACAATGTGGTTTGATACCAATGAAACTACTCAGAGCAAGCTCCATGATTATGgtaaaacttcactttaaaactttgctatgctattccattcttaattcatgtttgacgttttctgttttgtctggttcctgattag
Basic information
species | Glycine max |
transcript | GLYMA10G11770.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G11770.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ21415 (Selaginella moellendorffii), 5'ss of exon 17
TATGAATGGAATGCTAGGACGCAAGTGACAATGTGGTTTGATACCAATGAAACTACTCAGAGCAAGCTCCATGATTATGgtaaaacttcactttaaaactttgctatgctattccattcttaattcatgtttgacgttttctgttttgtctggttcctgattag
|||||||||||||| ||||||||||| || ||||||||||| | | ||| | ||| |||||||||||||||| | || | |||| | | | ||| | || | | | | || | || | |
TATGAATGGAATGCCAGGACGCAAGTTACTATGTGGTTTGACAATACGAGAACCTTGCCGAGTGCTCTCCATGATTATGgtatgtttccagtgctcgtctttacatttgttttcgcctgatagtctcttcct------ctgtgctgtggcag------------
upper sequence: GLYMA10G11770.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ23779 (Selaginella moellendorffii), 5'ss of exon 17
TATGAATGGAATGCTAGGACGCAAGTGACAATGTGGTTTGATACCAATGAAACTACTCAGAGCAAGCTCCATGATTATGgtaaaacttcactttaaaactttgctatgctattccattcttaattcatgtttgacgttttctgttttgtctggttcctgattag
|||||||||||||| ||||||||||| || |||||||| || | | || | ||| |||||||||||||||| |||| | |||| | | | ||| | || | | | | | | || | |
TATGAATGGAATGCCAGGACGCAAGTAACTATGTGGTTCGACAATACGAGAAGCTTGCCGAGTGCTCTCCATGATTATGgtatgttttcagtgctcgtctttacatttgttttcgcctgatagtctcttcct------ctgcgctgtggcag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23734173|gb|BU765313.1|BU765313EST: CTCCATGATTATG CTAACAAGTTTTGGAGTGGGCTTCTGGAAAGCTACTATCTCCCTCGAGCTT
genomic: CTCCATGATTATGgtaaaacttc ... tcctgattagCTAACAAGTTTTGGAGTGGGCTTCTGGAAAGCTACTATCTCCCTCGAGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGAATGGAATGCTAGGACGCAAGTGACAATGTGGTTTGATACCAATGAAACTACTCAGAGCAAGCTCCATGATTATGgtaaaacttcactttaaaactttgctatgctattccattcttaattcatgtttgacgttttctgttttgtctggttcctgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT