Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgactttcttgtccttatttaatttgtcattattgtggagagcaatttgtgttcttatactatttatttacatatgtttccag

Basic information

species Glycine max
transcript GLYMA10G05260.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g62020.1 (Oryza sativa), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgact--ttcttgtccttatttaatttgtcatta-ttgtggagagcaatttgtgttcttatactatttatttacatatgtttccag------
|| || |||||||| |||||||| |||||||| || || |||||| | |||||||| ||||| ||||||||||||||||| |||||| |  |    | |  |  ||||| |||     ||  ||    |       |     | | | | | |   |||| | ||| ||          
GTGCGCATTGCTCGCATTTTCAATACATATGGCCCTCGAATGTGTCTAGATGATGGCCGTGTGGTTAGCAATTTTGTTGCCCAGgttcgtttaacacgtaccgctattttattaacttttggttacacatttgcgctgtcaatatgaaattctgagtttatacatgattatcattgtag

upper sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g17230.1 (Oryza sativa), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgactttcttgtccttatttaatttgtcattattgtggag--agca-atttgtgttcttatactatttat--ttacatatg-----tttccag
||  | ||||| ||||| |||||||||||||| || || |||||||| ||||||||||| ||||||||||| || || || ||||||||  ||  ||     | | ||||   |    |  | | |   || | |||||   | |   | || |||   ||| | |||     |||||||
GTGAGAATTGCGCGAATATTCAACACATATGGCCCTCGTATGTGTTTAGATGATGGGCGAGTTGTTAGCAACTTCGTCGCTCAGgtttgtgttaatttatgat-tctaatcctttggaaaagagaaataagtatatttgaagtttagcattacttactattaaagatgcctcatttccag

upper sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgact---ttcttgtccttatttaatttgtcattattgtgg--agagcaatttgtgttcttatactatttatttacatatgtttccag
||  | ||||| || || || ||||||||||| || || |||||||| |||||||| || ||||||||||| ||||||||||||||||| ||   ||  ||    |  |  ||| |  |  |   |    | || | ||          ||   ||    |   |   |||| ||
GTGAGAATTGCACGCATATTTAACACATATGGCCCTCGAATGTGTTTAGATGATGGCCGAGTTGTTAGCAACTTTGTTGCACAGgtttgtctcagtttgtgattctgatgcattggagaagaggattatcatagaacttcagcactgcttaaagttggcattgcttcatttctag

upper sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G370048_T01 (Zea mays), 5'ss of exon 5
GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgactttcttgtccttatttaatttgtcattatt-gtggagagcaatttgtgttcttatactatttatttacatatgtttccag
|| |||||||| || |||||||| |||||||| || || |||||| | |||||||| ||||| || ||||||||||||||||||||| |  || ||     ||||  | | | |  || || || | || |   || ||    ||  | |   || |   | |  ||  ||
GTGCGTATTGCCCGCATTTTCAATACATATGGTCCTCGTATGTGTCTCGATGATGGCCGTGTGGTCAGCAATTTTGTTGCACAGgttcg-tttgctacatattatggactctatttttcttagttgtgatcctattatgcatgtaagc-agccatatgattgtccttgaag

upper sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgactttcttgtcct-tatttaatttgtcattattgtggagagcaatttgtgttcttatactatttatttacatatgtttccag
|| |||||||| || |||||||| |||||||| || || |||||  | || ||||| ||||| || |||||||||||||||||||||||  |      |  | ||    |||| || |  |||||       |||| ||   ||| || ||  || |     |  || |||
GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgctacatattatagactatttttcttagttgtgat-----atttatgcatttaaac-atccatatgatcgtccttgcag

upper sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G53520.4 (Arabidopsis thaliana), 5'ss of exon 4
GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgactttcttgtccttatttaatttgtcattattgtggagagcaatttg----tgttcttata---ctatttatttacatatgtttccag
||| | |||||||| ||||||||||||||||| ||| | |||||  | |||||||||||||||||||| || |||||||| |||||||  ||   |  ||   ||  |      |  | | ||  | |||  ||||       ||| | |   |||||       |||| | | |||
GTTAGAATTGCTCGTATTTTCAACACATATGGGCCCAGAATGTGCCTTGATGATGGGCGTGTTGTTAGTAACTTTGTTGCCCAGgtttagctccttcatcaacataaagacaaccgctttcgtataaagccttttgaaaacactctgacagaactattgtggcttatatctatgcag

upper sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0040g02710.t01 (Vitis vinifera), 5'ss of exon 5
GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgactttcttgtccttatttaatttgtcattattgtggagagcaatttgtgttcttatactatttatttacatatgtttccag--------------------------------
|| ||||| || || |||||||| |||||||| || || |||||| | |||||||||||||| |||||||||||||||||||||||||||  | ||    |||||||   ||  || |  ||   |   ||||       |  ||  ||   ||||  ||| |||   |                                 
GTACGTATAGCACGGATTTTCAATACATATGGGCCTCGTATGTGTATTGATGATGGGCGTGTGGTTAGCAATTTTGTTGCACAGgtttgatctcctga--cttattttcctta-cagttctgccaaacacaatgaac---cgaatcttagacatttttataagttctaaagtttttttaactgttatagctatgttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314595|gb|GR829588.1|GR829588
EST:     TGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAG                         GCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
genomic: TGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgacttt ... atgtttccagGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
EST: gi|16278830|gb|BI943117.1|BI943117
EST:     CCCGCATGTGTNTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAG                         GCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAA-CAAGA
genomic: CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgacttt ... atgtttccagGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
EST: gi|14990518|gb|BI316191.1|BI316191
EST:     CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAG                         GCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
genomic: CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgacttt ... atgtttccagGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
EST: gi|10709383|gb|BF009107.1|BF009107
EST:     CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAG                         GCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
genomic: CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgacttt ... atgtttccagGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
EST: gi|8283259|gb|BE020820.1|BE020820
EST:     CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAG                         GCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
genomic: CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgacttt ... atgtttccagGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
EST: gi|21887804|gb|BQ741017.1|BQ741017
EST:     CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAG                         GCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
genomic: CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgacttt ... atgtttccagGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA
EST: gi|14259336|gb|BG882252.1|BG882252
EST:     CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAG                         GCTATTCGTAAACAACCATTGACTGTTTATGGTGATGGGAAGCAAACAAGA
genomic: CCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgacttt ... atgtttccagGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGA