Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCGCCAATGGAACTCCAAGGTTTCCGATTTTGGACTTGCTAAGCTTTTGTGTTCTGAGAATAGTTACGTCACAACTCGAGTGATGGGGACATTTGGgttagtatgattaagctaagcattctcctatctctcttaccaaattataattagttcaagttcctgtatgattgcaatgtgtaagtggtccctaatgtttaaaggtcaaaagatattgattctctccttttttctttttctgtag

Basic information

species Glycine max
transcript GLYMA09G39160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G014366_T03 (Zea mays), 5'ss of exon 4
TTGATCGCCAATGGAACTCCAAGGTTTCCGATTTTGGACTTGCTAAGCTTTTGTGTTCTGAGAATAGTTACGTCACAACTCGAGTGATGGGGACATTTGGgttagtatgattaagctaagcattctcctatctctcttaccaaattataattagttcaagttcctgtatgattgcaatgtgtaagtggtccctaatgtttaaaggtcaaaagatattgattctctccttttttctttttctgtag
|||| |  || |||||| | |  || ||||||||||| ||||| ||||| ||||| || ||||| || || || ||||| || || ||||| |||||||||||||||     || |    ||| ||| |  ||  || |    | || ||   |  | || ||     ||     | || |  | |||| |    ||||  |                                           
TTGACCAGCAGTGGAACGCTAGAGTATCCGATTTTGGGCTTGCAAAGCTATTGTGGTCAGAGAAAAGCTATGTTACAACCCGTGTTATGGGAACATTTGGgttagtagtgagaacccttccatcctcatcgcta-ctcagtctactacaaacggagctagatcgatcttgtcgttactgagctattggtgc----tgttgcag------------------------------------------

upper sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G01540.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGATCGCCAATGGAACTCCAAGGTTTCCGATTTTGGACTTGCTAAGCTTTTGTGTTCTGAGAATAGTTACGTCACAACTCGAGTGATGGGGACATTTGGgttagtatgattaagctaagcattctcctatctctcttaccaaattataattagttcaagttcctgtatgattgcaatgtgtaagtggtccctaatgtttaaaggtcaaaagatattgattctctccttttttctttttctgtag
||||||||||||||||  | |||||||| |||||||||||||||||||| ||| | |||||||  ||||| || || ||||| |||||||| || || |||| |  |  ||||| ||   ||||  |   |||||| | | ||  |  ||      ||   |   | |   |    ||  | || |      || |  ||   |||  |    | | |                           
TTGATCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGGTCTGAGAGCAGTTATGTGACTACTCGTGTGATGGGAACTTTCGGgtaa--actattaaact---cattaac---tctctcctgc-aatctgcaagg----cagtctttaggaatgtgaatattaggaaataacttttact--ttgtgggttgatttgtttag---------------------------

upper sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G01330.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGATCGCCAATGGAACTCCAAGGTTTCCGATTTTGGACTTGCTAAGCTTTTGTGTTCTGAGAATAGTTACGTCACAACTCGAGTGATGGGGACATTTGGgttagtatgattaagctaa-gcattctcctatctctcttaccaaattataattagttcaagttcctgtatgattgcaatgtgtaagtggtccctaatgtttaaaggtcaaaagatattgattctctccttttttctttttctgtag
||||||| ||||||||  | ||||| || |||||||||||||||||||| ||||  || ||||  || ||||| ||||| ||||| ||||| || ||||||| |||    || || |     ||     |||   | ||    | |  |||  | ||||| ||| || |  |          | | ||||   | ||||                                               
TTGATCGTCAATGGAATGCTAAGGTATCAGATTTTGGACTTGCTAAGCTCTTGTTCTCCGAGAGCAGCTACGTGACAACCCGAGTAATGGGAACTTTTGGgtaagttgtttttagttggcatatataaatatgattgttggatagtattaaggatttcaaattcttgaaaaacattttgtcttgattggtttgttatgtag---------------------------------------------

upper sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
TTGATCGCCAATGGAACTCCAAGGTTTCCGATTTTGGACTTGCTAAGCTTTTGTGTTCTGAGAATAGTTACGTCACAACTCGAGTGATGGGGACATTTGGgttagtatgattaagctaagcattctcctatctctcttaccaaattataattagttcaagttcctgtatgattgcaatgtgtaagtggtccctaatgtttaaaggtcaaaagatattgattctctccttttttctttttctgtag
||||||||||||||||||| ||||| || |||||||| || || ||||| || ||||||||||  ||||| || || ||||| |||||||| ||||| ||||||||    ||    |  | | |       |  ||  |  ||||   |  | |   |  || |||     |  |||||  |     |                                                         
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccatttccttttggtaatgaatcgaccttcacataaaatggcatattgagaagatttctgatatttcccaatggctttccag---------------------------------------------------------