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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTATTGCTAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcctaaactatctgaaaacctttactctcattgttgattgcagtgcaatgggttttcaatgagctatctggaaatcaattttggattgtgatt...

Basic information

species Glycine max
transcript GLYMA09G38530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38530.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g00670.t01 (Vitis vinifera), 5'ss of exon 5
GAACTTATTGCTAAGAGCATTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcctaaactatctgaaaacctttactctcatt-gt-tgat-tgcagtgcaatgggttttcaatgagctatctggaaatcaattttggattgtgatt
|||||||| ||||| |||||||||||||||||||||||||| || |||||||| || |||||||||||||||||| |       |    |||   ||||| | || |  || |||| |    || |    | ||||| | |  | |        ||||  |  |||      
GAACTTATCGCTAAAAGCATTGAATCTTCAGACCTTAACTTCTCTAGATACGGTGACACCTTTTTTGAGgcaagcattgattctttatagaagttctttaatgtcttccgtatgatgtcttctgaagcatgatttcattta-ttgtggacgttgcaatgataaattccat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045706|gb|CA783207.1|CA783207
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAT
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|5687979|gb|AI940994.1|AI940994
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGATTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|209717990|gb|BW671821.1|BW671821
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|7284994|gb|AW597481.1|AW597481
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|27427457|gb|CA938977.1|CA938977
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|21286052|gb|BQ473923.1|BQ473923
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|16104801|gb|BI892541.1|BI892541
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|10709482|gb|BF009206.1|BF009206
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|13480362|gb|BG509705.1|BG509705
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|20449584|gb|BQ253708.1|BQ253708
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|120533835|gb|EH261968.1|EH261968
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|21677809|gb|BQ630160.1|BQ630160
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|6726947|gb|AW311227.1|AW311227
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|7042245|gb|AW472139.1|AW472139
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|120533411|gb|EH261544.1|EH261544
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|16347133|gb|BI972728.1|BI972728
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|6724745|gb|AW309144.1|AW309144
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|16347997|gb|BI973592.1|BI973592
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|16997181|gb|BM086553.1|BM086553
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
EST: gi|120533741|gb|EH261874.1|EH261874
EST:     TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAG                         GTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG
genomic: TTGAATCTTCAGACCTTAACTTTTCAAGATACGGCGATACCTTTTTTGAGgcaagcttcc ... attacttcagGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAG