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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgttgtgtatctatattaattgaccatcttttctttataatccttctggttacaaagttatttaaaatcatatgtagttagcgatagtctcttgtttttatactgttttctccaagatattccaattttgagtttttgttttcttctacttgttttttaacag

Basic information

species Glycine max
transcript GLYMA09G08150.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08150.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G130440_T01 (Zea mays), 5'ss of exon 4
GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgttgtgtatctatattaattgaccatcttttctttataatccttctggttacaaagttatttaaaatcata-tgtagttagcgatagtctcttgtttttatactgttttctccaagatattccaattttgagtttttgttttcttctacttgttttttaacag
||||| || || ||||||||||||  ||| ||||||||  | ||| | |||||||| ||||||||||| ||||||||||        | |||   |||| | |      ||| || ||   ||  |||   || |  |||| |  | | | | || || |    |  |   |   |||  | |                                                             
GAAATCATCGACATGTGTGATTATGCTGTGGGGCTAAGTCGCCAACTAAATGGATCCATTATACCATCTGAACgtaagacc------tgtcttccttaagttatatatattttttcatg--ccagctgaaaactacattatctgcagtgaaagtgcagattttcactg---cagatttgaacat------------------------------------------------------------

upper sequence: GLYMA09G08150.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 5'ss of exon 4
GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgttgtgtatctatattaattgaccatcttttcttt-ataatccttctggttacaaagttatttaaaatcatatgtagttagcgatagtctcttgtttttatactgttttctccaagatattccaattttgagtttttgttttcttctacttgttttttaacag
|||||| |||||||||||||||||  ||||||| ||||  ||||| | |||||||| || ||||| || |||||| || |      ||   |||||||  || |||| | || ||| ||  | ||  || |  |    ||| | |||| | |    | |||       ||| |  |   |||                                                              
GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATGGATCCATCATACCTTCTGAACgtgagctca----gtcattatatta-ctggccatttcttatttcatgtttctcttgatggc----ttagtgaaaagcttcaagaattattacagctctttaatgactat--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258546|gb|BG881454.1|BG881454
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|208083788|gb|GD881736.1|GD881736
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|193367841|gb|FK333423.1|FK333423
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|254327078|gb|GR836687.1|GR836687
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|208034630|gb|GD836794.1|GD836794
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|193521194|gb|FK480305.1|FK480305
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|254341577|gb|GR852714.1|GR852714
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|151408630|gb|EV278438.1|EV278438
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|12489527|gb|BG043049.1|BG043049
EST:     TTGTGTTGGGCTAA-CAGACAATTGAATGGATCAATTATACCATCACAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|6668020|gb|AW279471.1|AW279471
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|16347961|gb|BI973556.1|BI973556
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|254331835|gb|GR846145.1|GR846145
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|193455585|gb|FK418764.1|FK418764
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTGTACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG
EST: gi|27427065|gb|CA938585.1|CA938585
EST:     TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC                         GTCCAGATCATATGATGTTTGAG
genomic: TTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAACgtaagattgt ... tttttaacagGTCCAGATCATATGATGTTTGAG