Sequence
atgc intronic sequence ATGC exonic sequenceGGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCAgtaagtattacatcttgtcataattgtctgcactggttttccttttctgatcatttccttagtcacttccatcaaatcatactaagatgcagttgaatct...
Basic information
species | Glycine max |
transcript | GLYMA08G22390.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22390.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G20650.2 (Arabidopsis thaliana), 5'ss of exon 4
GGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCAgtaagtattacatcttgtcataattgtctgcactggttttccttttctgatcatttccttagtcacttccatcaaatcatactaagatgcagttgaatct--
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GGTGGTGATTTGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGTCGgtaagt-ttac----tggc-tgaatgatagctgtatctttattttgcatatatgttttatctctatacctgagaagtgcttctatgttgtacttaataacag
upper sequence: GLYMA08G22390.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0014g04740.t01 (Vitis vinifera), 5'ss of exon 4
GGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCAgtaagtattacatcttgtcataattgtctgcactggttttcctttt-ctgatcatttccttagtcacttccatcaaatcatac-taagatgcagttgaatct
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GGTGGTGATCTAATCAAATGGGACAAGGCAAAGATTGGATACTATGTTGGCATCGATATTGCTGAAGGCTCGgtaaactgctaatatacttctttctgtttcttgaaactctctttctgttggactttgacgtggatgaaattat-aattaatgcatgaactggaggccattt-
upper sequence: GLYMA08G22390.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g02860.t01 (Vitis vinifera), 5'ss of exon 2
------------------GGTGGT-GATCTTATCAAATGGGACAAGGCCAA-AATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCAg--taagtattacatc--ttgtcataattgtctgcactggttttccttttctgatcatttccttagtcac--------ttccatcaaatcatactaagatgcagttgaatct-------------------------------------
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AAAGTGGCCGACCATTATAGTGCTAGGACCAATCAAACCTTGGAAGAACGAGAAGCAAGTCCAATCATTCATTTGAGGAAACTAAACAACTGGATTAAGAgtgtcctcattcagctttatgctctccgaggggatgctgttcttgattttgctcgtggcaagggtggtgatctaatcaaataggacaaggcaaagattggatactatgttggcaccaatattgctgaaggcttgatagaag
upper sequence: GLYMA08G22390.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S49_100V6.1 (Physcomitrella patens), 5'ss of exon 5
GGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCAgtaagtattacatcttgtcataattgtctgcactggttttccttttctgatcatttccttagtcacttc-catcaaatc-atactaagatgcagttgaatct
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GGGGGAGATCTGATCAAGTGGGACAAGGCGTCAATTGGTTACTACGTTGGTATTGACATTGCCGAAGGCTCGgtactcatcttttaagcccacaatgaaata-atgctttttgctgatttcaatatgaacgagtccgcaacgcatggactcgatgcttgggttaattttgttg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298178509|gb|HO024244.1|HO024244EST: ACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCA ATCAAAGACTGCAGAACACGTTACAACGGTGATGCTGATCATCATCAACGA
genomic: ACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCAgtaagtatta ... atctttccagATCAAAGACTGCAGAACACGTTACAACGGTGATGCTGATCATCATCAACGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCAgtaagtattacatcttgtcataattgtctgcactggttttccttttctgatcatttccttagtcacttccatcaaatcatactaagatgcagttgaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG