1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCTAGCAGGATGTGTAGTGGTATCAATAGCAGATAGCTTTGCACCAAAAGAAATTGCAACTCGTCTGCGTGTTTCTAAAGCAAAGGGTATTTTCACTCAGgtgatcttttaaattttgtattatgcttatgactttaaaaataaagctattgttgatcaaagtgagtctattcaatctttgactttgttctttcttagtt...
species | Glycine max |
transcript | GLYMA08G11980.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAATTGCAACTCGTCTGCGTGTTTCTAAAACAAAGGGTATTTTCACTCAG GATTTCATATCAAGAGGTGGCAGGAAATTCEST: gi|4405666|gb|AI507815.1|AI507815
genomic: AAATTGCAACTCGTCTGCGTGTTTCTAAAGCAAAGGGTATTTTCACTCAGgtgatctttt ... tttgtttcagGATTTCATATCAAGAGGTGGCAGGAAATTC
EST: AAATTGCAACTCGTCTGCGTGTTTCTAAAGCAAAGGGTATTTTCACTCAG GATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAGEST: gi|120533588|gb|EH261721.1|EH261721
genomic: AAATTGCAACTCGTCTGCGTGTTTCTAAAGCAAAGGGTATTTTCACTCAGgtgatctttt ... tttgtttcagGATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAG
EST: AAATTGCAACTCGTCTGCGTGTTTCTAAAGCAAAGGGTATTTTCACTCAG GATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAGEST: gi|9901283|gb|BE610251.1|BE610251
genomic: AAATTGCAACTCGTCTGCGTGTTTCTAAAGCAAAGGGTATTTTCACTCAGgtgatctttt ... tttgtttcagGATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAG
EST: AAATTGCAACTCGTCTGCGTGTTTCTAAAGCAAAGGGTATTTTCACTCAG GATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAG
genomic: AAATTGCAACTCGTCTGCGTGTTTCTAAAGCAAAGGGTATTTTCACTCAGgtgatctttt ... tttgtttcagGATTTCATATCAAGAGGTGGCAGGAAATTCCCTTTGTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAGCAGGATGTGTAGTGGTATCAATAGCAGATAGCTTTGCACCAAAAGAAATTGCAACTCGTCTGCGTGTTTCTAAAGCAAAGGGTATTTTCACTCAGgtgatcttttaaattttgtattatgcttatgactttaaaaataaagctattgttgatcaaagtgagtctattcaatctttgactttgttctttcttagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataaa