1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AGTTGACTACACTGTGCCATCGATAAATCGTGACTTTGGCACAGTTTTTATTGGGGATAAGAATGTTGCAATGCTGGTTGTTTCTGCAGGATGGGCCAAGgttgattgccgtgtgtttctgtgtggatgtgtggtgtttgaattatttctgcattggtgaattgttatattgtggttttgttggtgcag
species | Glycine max |
transcript | GLYMA08G00910.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGGGATAAGAATGTTGCAATGCTGGTTGTTTCTGCAGGATGGGCCAAG ATAAGAGAGCAAGGGCAACAGAAGGGCGAGGCAAGTCCTTACCTAGCAGAAEST: gi|209703881|gb|BW667922.1|BW667922
genomic: TTGGGGATAAGAATGTTGCAATGCTGGTTGTTTCTGCAGGATGGGCCAAGgttgattgcc ... gttggtgcagATAAGAGAGCAAGGGCAACAGAAGGGCGAGGCAAGTCCTTACCTAGCAGAA
EST: TTGGGGATAAGAATGTTGCAATGCTGGTTGTTTCTGCAGGATGGGCCAAG ATAAGAGAGCAAGGGCAACAGAAGGGCGAGGCAAGTCCTTACCTAGCAGAAEST: gi|213593207|gb|DB966088.1|DB966088
genomic: TTGGGGATAAGAATGTTGCAATGCTGGTTGTTTCTGCAGGATGGGCCAAGgttgattgcc ... gttggtgcagATAAGAGAGCAAGGGCAACAGAAGGGCGAGGCAAGTCCTTACCTAGCAGAA
EST: TTGGGGATAAGAATGTTGCAATGCTGGTTGTTTCTGCAGGATGGGCCAAG ATAAGAGAGCAAGGGCAACAGAAGGGCGAGGCAAGTCCTTACCTAGCAGAA
genomic: TTGGGGATAAGAATGTTGCAATGCTGGTTGTTTCTGCAGGATGGGCCAAGgttgattgcc ... gttggtgcagATAAGAGAGCAAGGGCAACAGAAGGGCGAGGCAAGTCCTTACCTAGCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGACTACACTGTGCCATCGATAAATCGTGACTTTGGCACAGTTTTTATTGGGGATAAGAATGTTGCAATGCTGGTTGTTTCTGCAGGATGGGCCAAGgttgattgccgtgtgtttctgtgtggatgtgtggtgtttgaattatttctgcattggtgaattgttatattgtggttttgttggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG