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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGTCATGTGgtatgttctatgggtctagatatcgcaattttttagttcttctgctatttggtggttgtgattgtccttaatattttacag

Basic information

species Glycine max
transcript GLYMA07G38890.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os07g33670.1 (Oryza sativa), 5'ss of exon 5
AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGTCATGTGgtatgttctatgggtctagatatcgcaattttttagttcttctgctatttggtggttgtgattgtccttaatattttacag----------------------------
 || |||||| |||| |   | ||   |||     |  | ||||| || ||||| ||  | |||||||||||||||||||| ||||| ||  |||||||||||  |  |     ||   |  ||    |  |  |  |  | ||  |       | |    |    |  || |   | |                              
CAAAATAATGGAAGATCGTAGCAACCAAGTTGCAATTAGCAAAGAAGAAAATGCTGTCAGGCAGCTTATAAGCATGATAAGCAGTGATAATCGTCATGTGgtacatattcaatctccctaattcattgtgctcaaagttctgtggaaacaaaatgctcatttcaagcacaacacagttccttcttttaatttagaagttacttttgcag

upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G451672_T02 (Zea mays), 5'ss of exon 6
AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGTCATGTGgtatgttctatgggtctagatatcgc--aattttttagt--tcttctgctatttggtggttg-tgattgtccttaatattttacag----------
 || |||||| |||| |   | ||     |     |  | ||||| || ||||| ||  | |||||||||||||||||||| ||||| ||| |||||||||||    |||     |   |   |     | |  | |||  | |||    |||   || ||  | ||| |  ||||  | |||             
CAAAATAATGGAAGATCGTAGCAACCATATTGCAATTAGCAAAGAAGAAAATGCTGTCAGGCAGCTTATAAGCATGATAAGCAGTGATAACCGTCATGTGgtacacactacataccccaactgcctttcagtagtcagtcatgttcaaacattaaatgtttccttattctttttaaattcttaattgcatttgcag

upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G451672_T03 (Zea mays), 5'ss of exon 7
AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGTCATGTGgtatgttctatgggtctagatatcgca--attttttagt--tcttctgctatttggtggttg-tgattgtccttaatattttacag----------
                                   |  | ||||| || ||||| ||  | |||||||||||||||||||| ||||| ||| |||||||||||    |||     |   |   |     | |  | |||  | |||    |||   || ||  | ||| |  ||||  | |||             
---------------------------------AATTAGCAAAGAAGAAAATGCTGTCAGGCAGCTTATAAGCATGATAAGCAGTGATAACCGTCATGTGGTACACACTACATACCCCAACTGCCTTTCAGTAgtcagtcatgttcaaacattaaatgtttccttattctttttaaattcttaattgcatttgcag

upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 5
AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGTCATGTGgtatgttctatgggtctagatatcgcaattttttagttcttctgctatttggtggttgtgattgtccttaata----ttttacag
 ||||||||||||||  |||||||| |     || | |||||||| || ||||| ||| | ||||||||||| ||||||| |||||||||    || ||||||||||   |     |   |       |||   |   ||| | || | |  |||     ||   | | | ||    ||| | ||
GAAGATAATGCAAGATGAAGGAAATCGTTCTGTTATTGGTAAAGATGAAAATGCGGTGAGGCAGCTTATAAGTATGATAACTAGTGACAATCAACACGTGgtatgttggtttttgttctgtgctatggtttgaaaaaacttttactttcttttgggaacaatcaccataactacaggtttgatag

upper sequence: GLYMA07G38890.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0116g00830.t01 (Vitis vinifera), 5'ss of exon 5
AAAGATAATGCAAGACCAAGGAAATAGAGTGTTTGTAGGTAAAGACGAGAATGCAGTGCGACAGCTTATAAGCATGATAAGTAGTGACAACTGTCATGTGgtatgttc-tatgggtctagatatcgc----aattttttagttc----ttctgctatttggtg----gttgtgattgtccttaatattttacag
|||||||||||||||  |||||||  | |   |||| |||||||| ||||||||| |||| ||||| |||||||||||||||||||||||  ||||||||||||||   ||    | ||  | |       || || |  |||     |||| |  |  ||       || | ||||| ||  |  |||  |||
AAAGATAATGCAAGATGAAGGAAACCGTGCAGTTGTTGGTAAAGATGAGAATGCAATGCGGCAGCTCATAAGCATGATAAGTAGTGACAATCGTCATGTGgtatgtcagtaaatttttaacttttatgaataagttctcggttgcttattcttccctcaggcattctattctaattgttct-gacttttggcag