1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTATAATAGGCTTAGACCCTTGAGCTATCGAGGAGCTGATGTTTTTATACTTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttctttcattcaattaggatggttatattctaaatcaatttctgcgctcagtatgatataactgattaagttattgtttttttggtttcttctttcag
species | Glycine max |
transcript | GLYMA04G02540.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|298173197|gb|HO020181.1|HO020181
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|8285172|gb|BE022731.1|BE022731
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|16349155|gb|BI974750.1|BI974750
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|20449761|gb|BQ253885.1|BQ253885
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|298171524|gb|HO016556.1|HO016556
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|209720783|gb|BW657757.1|BW657757
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|213589336|gb|DB961669.1|DB961669
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATAATAGGCTTAGACCCTTGAGCTATCGAGGAGCTGATGTTTTTATACTTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgttcatttctttcattcaattaggatggttatattctaaatcaatttctgcgctcagtatgatataactgattaagttattgtttttttggtttcttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG