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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTTCCAGACTATCATCATCATGTGAAGTCATATGAAAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTAAACCTTCAAGTGGTCAAAAGgtaatgtgcatattgcctcagcatttttcagagcccgagtcgttttctgtatcaataaggatgtcatgacacacttcttaatacttgcaatatgaaacat...

Basic information

species Glycine max
transcript GLYMA03G34340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34340.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G050309_T01 (Zea mays), 5'ss of exon 5
AATGCTTCCAGACTATCATCATCATGTGAAGTCATATGAAAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTAAACCTTCAAGTGGTCAAAAGgtaa-tgtgcatatt-gcctcagcatttttcagag---cccgagtc---gttttctgtatcaataaggatgtcatgacacacttcttaatacttgcaatatgaaacat
|||||||||| ||||| || |||||||     | ||||| || || || || || || |||||||| || |||||| | |||||||| |||||||||||||||| | |  | ||  ||  ||   |   |    |   |   |||     ||| |    ||  |    |||| ||||  |  |  | ||||  |||||  || |    
AATGCTTCCAAACTATTATGATCATGTCCGTACCTATGAGAACACCCTCATAACTAAGTTTTTTGGCCTCCACAGGGTGAAACCTTCTAGTGGTCAAAAGgtaactattgacatcagcaccaatttcacttgaggtttctttagtttaattttcccccttcctttttaatgtaatgatcc-ttcttgaatatctgcaaattgcag---

upper sequence: GLYMA03G34340.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G09920.1 (Arabidopsis thaliana), 5'ss of exon 4
AATGCTTCCAGACTATCATCATCATGTGAAGTCATATGAAAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTAAACCTTCAAGTGGTCAAAAGgtaatgtgc-atattgcctcagcatttt---tcagagcccgagtcgttttctgtatcaataaggatgtcatgacacacttcttaatact-tgcaatatgaaacat----------------------------------------------------------------------------
 ||||||||||| || ||||||||||||||| ||||||| || || || || || ||||| ||||| || ||||| || ||||| |||||||||||||||||  ||  | | | | |||||  ||| |   |  ||       |  |  |  |  |  |    |  | |||  |   | ||| ||||   || |   |  |||                                                                              
GATGCTTCCAGATTACCATCATCATGTGAAGACATATGAGAACACCCTCATTACTAAATTCTTTGGCCTTCACAGAATCAAACCATCAAGTGGTCAAAAGgtcctgaaccaaaatacctcaagattctgattttgattttttattatcattagctttgaagttgccgacattgc-tgcctctaaatatgatgtagagtagaactctaacattagagcaacatttggaaatccaaatcaatcttaaaactaactatgtttgaaaatttctcttccattgcag

upper sequence: GLYMA03G34340.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 4
AATGCTTCCAGACTATCATCATCATGTGAAGTCATATGAAAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTAAACCTTCAAGTGGTCAAAAGgtaatgtgcatattgcctcagcatttttcagagcccgagtcgttttctgtatcaataaggatgtcatgacacacttcttaatacttgc-aatatgaaacat
|||||||||| |||||||||||||||||  |||  |||| || ||||| || ||||||||||||||||| |||||||| |||||||||||||| |||||||||||     || ||  | |    |||  |       |||  ||||    ||| | || |||| |  |       |||| | | || | || ||     | 
AATGCTTCCAAACTATCATCATCATGTGCGGTCCCATGAGAACACACTCATAACAAAATTTTTTGGTCTTCACAGGATCAAACCTTCAAGTGGGCAAAAGgtaatcaaattaatgaattaattatttctaatattgcagttctttttca-atctagaatgatgcctagttctggatctttaaagttactaaaatttcggaa