Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTCATTTCACAACTATAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgccaagtacaacggtcgttatttcttcagtggggtctctttatttgaagtcgtttgatttgatcataatacactatcacagtgtcactggctatttaattttgcag

Basic information

species Glycine max
transcript GLYMA02G42290.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42290.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0067g00330.t01 (Vitis vinifera), 5'ss of exon 5
ACCTTCATTTCACAACTATAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagc---aatgccaagtacaacggtcgttatttctt-cagtggggtctctttatttgaa---gtcg-tttgatttgatcat--aatacactatcacagtgtcactggctat---ttaattttgcag--------
 |||||||| |||||||| ||  |||||||||| ||||| ||||| |||||||||||||| || |||||  |||||||||||||| | | ||| |||||||||  |   | |      | |   | |  | | | ||| || |      ||  |   | ||    ||  |||  ||| ||| |     |    | |  |  | || || || |   |   |||| | |        
TCCTTCATTCCACAACTACAGGCTTTGGTCTTTTCTTGGTCTTGGTATGACCACTTACACTGCCTGGTATTTGACCATTGCAGCCCTGGTTCAAGGCCAGgtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctcaacggaaagccattgactttggatggtttttactgttttacag

upper sequence: GLYMA02G42290.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S211_67V6.1 (Physcomitrella patens), 5'ss of exon 4
ACCTTCATTTCACAACTATAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatg--ccaagtacaacggtcgttatttcttcagtggggtctctttatttgaagtcgt---ttgatttgatcataatacactatcacagtgtcactggctatttaattttgcag-
 || || || |  |||||  |  | ||||| ||| | |||||    |||| | | |||||||||||||||||||| ||||| ||  |||| ||||||||||| |  ||     |   | ||| |||    |||    ||   || | ||  |    |||  | |   |  ||||     | |||| |  | |||  ||      ||   | ||   ||   
GCCATCGTTCCGAAACTACCGGCTCTGGTCGTTCTTCGGCCTCATTATGATCTCCTACACAGCTTGGTACATGACAATTGCTGCACTTGCCCATGGCCAGgtgacgaactgttcctcttcaatggtataaatt---gcaactggttttcagtcacagaatccttccatcaattttgctctcatactcc-taacaaggttctgaactg--tgatggagctag

upper sequence: GLYMA02G42290.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S90_46V6.1 (Physcomitrella patens), 5'ss of exon 4
ACCTTCATTTCACAACTATAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaa---------gcaatgccaagtacaacggtcgttatttcttcagtggg----gtc-----------tctttatttgaagtcgtttgatttgatcataatacactatc--acagtgtcactg--gctatttaattttgcag------
||| || || |  |||||  || | ||||||||| | |||||    |||| | | |||||||||||||||||||| ||||| ||  |||| |||||||||||||          | | |  || | | ||||   || | | | |||   |    |||           ||||||| |  || | |   || | ||||   |   || ||  ||| |   |  |  | | |  | ||||   |      
ACCATCGTTCCGAAACTACCGACTGTGGTCTTTCTTCGGCCTCATTATGATCTCCTACACAGCTTGGTACATGACTATTGCTGCTCTTGCCCATGGCCAGgtaatggacttcaacgacgtgaattgctacgggttttttatttacaggaagacgagtcatttctattcatctttatatatagccatc-aatctaatcaatttctgctttccaacactcctaacgaggttctggacttttatggagccag

upper sequence: GLYMA02G42290.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ21839 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCATTTCACAACTATAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgta----agcaatgccaagtacaacggtcgttatttcttcagtggggtctctttatttgaagtcgtttgatttgatcataatacactatcacagtgtcactggctatttaattttgcag
 || || |||||||||||| || | ||||| ||||| ||| | || |||||||||||||| || |||||||||||||| || || || |  || |||||||||    || |   | ||| | ||    |   ||| |  |  ||   | ||||  | |    |||    ||| | ||    | |  | || |     ||| |                 
CCCGTCTTTTCACAACTATCGAGTGTGGTCCTTCCTCGGCTTGGGGATGACCACTTACACGGCCTGGTACATGACCATCGCTGCGATCGTCCACGGCCAGgtagagaagaagaacaaagaaaaatctcccaaattcccactttgtcttgtcttcctctctc-tcgcgctattcgttctc--tcctttctccccacaacacgga----------------

upper sequence: GLYMA02G42290.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ36050 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCATTTCACAACTATAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgccaagtacaacggtc-gttatttcttcagtggggtctctttatttgaagtcgtttgatttga-tcataatacact-atcacagtgtcactggctatttaattttgcag---------------------------------------------
 || || || |||||||||||||||||||| ||||| || ||||| ||||| |||||||| |||||||||||||| ||  | ||  | |  |||||| |||| ||  | ||     | || | ||   |   |  | ||   | |||| | |      |  ||   | | || | ||  | || | ||||  |  |   |    |  |  ||    ||                                             
TCCATCGTTCCACAACTATAGAATTTGGTCCTTCCTGGGGCTTGGAATGACAACTTACACGGCTTGGTACATGACAATCACTGCTCTCGTCCATGGCAAGgtgagagaagcatctaaaaaagctccactggatgataagcttg-tctcgtcaaagtttgctgtagaactagaattatctttcatttatcatgggatagattttaaacttcttacataggcgtggtctaacatcaataattctcacacttcttcacttttgcag

upper sequence: GLYMA02G42290.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ34222 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCATTTCACAACTATAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgccaagtacaacggtcgttatttcttcagtggggtctctttatttgaagtcgtttgatttgatcataatacactatcacagtgtcactggctatttaattttgcag
 || || |||||||||||| || | ||||| ||||| ||| | || |||||||||||||| || |||||||||||||| || || || |  || |||||||||   ||    ||| |||| |      || ||   | |     || | |  |||   || | |   |    |   || |  | || |  |    |   | |             
CCCGTCTTTTCACAACTATCGAGTGTGGTCCTTCCTCGGCTTGGGGATGACCACTTACACGGCCTGGTACATGACCATCGCTGCGATCGTCCACGGCCAGgtagagaag---aagaacaaaga--aaaatctcccaaattcccactttgt-cttgtcttcctctctctctcgcgctattcgttctctcctttctccccacaacacg---------

upper sequence: GLYMA02G42290.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ18760 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCATTTCACAACTATAGAATTTGGTCTTTCCTTGGCCTTGGCATGACCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatgcc--------aagtacaacggtcg------ttatttcttcagtggggtctctttatttgaagtcgt--ttgatttgatcataatacactatcacagtgtcactggctat----ttaattttgcag--------------------------------------------------------
 || || || |||||||||||||||||||| ||||| || ||||| ||||| |||||||| |||||||||||||| ||| | ||  | |  |||||| |||| ||  | ||         |  | ||  ||  |      || | || |||  |    || |  |  |  | |  |  || ||||  |  |  | |  |   |||   | |   | ||     |  |||||  |                                                         
TCCATCGTTCCACAACTATAGAATTTGGTCCTTCCTGGGGCTTGGGATGACAACTTACACGGCTTGGTACATGACAATTACTGCTCTCGTCCATGGCAAGgtgagagaagcatctaaaaaagctccactggatgataagcttgtctcgtcaaagtttgctgtagaactagaattatctttcattttcttttgctgctttgctacatcatgagatgatagaggatagattttaaacttcttgtataggcgtggtctaacatgaataattctcacacttcttcacttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789895|gb|BG652486.1|BG652486
EST:     CCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAG                         GTTGAAAATGTGATTCACACTGGCCCNNNNNNNTTGGTATTGTATTTCACG
genomic: CCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatg ... aattttgcagGTTGAAAATGTGATTCACACTGGCCCAAAAAAATTGGTATTGTATTTCACG
EST: gi|18733933|gb|BM527893.1|BM527893
EST:     CCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAG                         GTTGAAAATGTGATTCACACTGGCCCNNNNNNNNTTGGTATTGTATTTCAC
genomic: CCACTTACACAGCTTGGTACATGACCATTGCAGCCATTGCTCATGGCCAGgtaagcaatg ... aattttgcagGTTGAAAATGTGATTCACACTGGCCC-AAAAAAATTGGTATTGTATTTCAC