1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAgtatgtggatctgtttttgaacgttttgttttgaatttagaaatttagaaatctattgtagaatatggattgctgtgtgttgattttgggattgcgtgtattattcggggtttag
species | Glycine max |
transcript | GLYMA02G38160.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGA GTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTEST: gi|24205505|gb|BU964758.1|BU964758
genomic: AATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAgtatgtggat ... cggggtttagGTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTT
EST: AATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGA GTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTEST: gi|6566248|gb|AW233929.1|AW233929
genomic: AATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAgtatgtggat ... cggggtttagGTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTT
EST: AATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGA GTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTNT
genomic: AATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAgtatgtggat ... cggggtttagGTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAgtatgtggatctgtttttgaacgttttgttttgaatttagaaatttagaaatctattgtagaatatggattgctgtgtgttgattttgggattgcgtgtattattcggggtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA