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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGgtacatgaattcaacacatgtagtctttacttttaccagttatttgcttcccagaagaaagaaagcatgagatgtctgacttgaatttctatatttgtcttctttaatgaag

Basic information

species Glycine max
transcript GLYMA02G15330.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G15330.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g39630.1 (Oryza sativa), 5'ss of exon 4
GCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGgtacatgaattcaacacatgtagtctttacttttaccagttatttgcttcccagaagaaagaaagcatgagat--gtctgacttgaatttctatatttgtctt--ctttaatgaag
|| || ||||||||||| || || ||||| |||||||||||||| ||| | ||||||||  |          |  |   ||  | | |     |   |||  |   |  | ||            ||    ||||   || ||| |  || ||| ||  | ||  | |  
GCTCGTTTCTTCTTCCAGCAGCTGATATCTGGAGTTAGCTACTGCCATTCCATGgtacagtatcattttgatttcaaagttaccgtgtgattttcgcttgtctataactataagcggtttgctgcattgagctgaagcgattttgttaatgtgtttttgcattgttcag-

upper sequence: GLYMA02G15330.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G171435_T02 (Zea mays), 5'ss of exon 4
GCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGgtacatgaattcaacacatgtagtctttacttttaccagttatttgcttcccagaagaaagaaagcatgagatgtctgacttgaatttctatatttgtcttctttaatgaag
|| |||| ||||||||||||||| || |||||||| |||||||| ||| ||||||||   |   |    | ||   | |     ||| | ||  |  ||  |    |     |  |     ||||    ||||  ||  ||| | ||||  | || |  |      
GCTCGCTACTTCTTCCAACAACTCATTTCAGGAGTAAGCTACTGCCATTCAATGgtattag---ttgttatataatggcacatttttcatcatattgttattgtttactcataccatgcattgag----ctgagctgccttttt-tattcttattttcaag-----

upper sequence: GLYMA02G15330.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G081915_T02 (Zea mays), 5'ss of exon 3
GCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGgtacatgaattcaacacatgtagtctttacttttaccagttatttgcttcccagaagaaagaaagcatgagatgtctgacttgaatttcta-tatttgtcttctttaatgaag
||||| ||||| ||||||||||| |||||||| || |||||||| ||| | ||||||| |  |||         |  ||||| |||  |   |||| |    |  ||      |     |  ||   |||||  |  |||  ||  | ||| ||| | |   ||   
GCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATGgtacgtatattgt-------ttttctttgcttccaat-gttacta--ctgtcaatctgtactgctctggactggtctgtttaaaatcgcttctgtttttctgcctacctg---

upper sequence: GLYMA02G15330.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G081915_T01 (Zea mays), 5'ss of exon 3
GCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGgtacatgaattcaacacatgtagtctttacttttacca--gttatttgcttcccagaagaaagaaagcatgagatgtctgacttgaatttctatatttgtcttctttaatgaag
||||| ||||| ||||||||||| |||||||| || |||||||| ||| | ||||||| |  |||       | | |  |  | | |||| |  || | |   | |      | |        |   |  ||     ||  |||||   |   | ||| | ||     
GCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATGgtacgtatattgtttttcttt-gcttccaatgttactactgtcaatctgtactgctctggactggtctgtttaaaatcgcttctgtttttctgcctacctgttcgtcaag----

upper sequence: GLYMA02G15330.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G33950.1 (Arabidopsis thaliana), 5'ss of exon 4
GCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGgtacatgaattcaacacatgtagtctttacttttaccagttatttgcttcccagaagaa--agaaagcatgagatgtctgacttgaatttctatatttgtcttctttaatgaag
||| | || |||||||| ||||| || ||||||||||| ||||||||||| |||||| |||||        |  |  ||| || |   | || |  ||      |    | |   ||    | | ||| ||   | || |  || ||                     
GCGAGGTTTTTCTTCCAGCAACTCATTTCAGGAGTTAGTTACTGTCATGCTATGgta-atgaa--------aaatgctctcta-tcaaatcaatgcttcatcctctgtgaaattcagctgacttaagaagttaaattttatgttgtag--------------------

upper sequence: GLYMA02G15330.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 4
GCGCGCTTCTTCTTCCAACAACTTATATCAGGAGTTAGCTACTGTCATGCAATGgtacatgaattcaacacatgtagtctttacttttaccagttatttgcttcccagaagaaagaaagcatgagatgtctgacttgaatttctatatttgtcttctttaatgaag
|| || |||||||||||||||||| |||||||||| |||||||||||||| ||||||    || |       |   | ||| || | |     |||||   | ||   || |||  ||  | | |||   | | ||| ||||| || || || ||  ||  |||||
GCACGTTTCTTCTTCCAACAACTTGTATCAGGAGTCAGCTACTGTCATGCGATGgtattcaaacttttagttttctgccttaacctctgtt--ttattatttgcctgaaaaaaatgaactaggcgat---taagttggatttc-atgtt-gtatttctttttgaag