1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTCCATTCCTACTTGATGATCCTAATGTTGGACTGCTATTCCCTGCTGATGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatatgtcaactactttgttttataacatggtagaattttacatattttgatctgctttaaaagtattgctctgcaaccttagtttttaccctat...
species | Glycine max |
transcript | GLYMA02G04320.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|20497810|gb|BQ272740.1|BQ272740
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|11412198|gb|BF424209.1|BF424209
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGGAAG-AAGTTGCTEST: gi|209697330|gb|BW655571.1|BW655571
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGG-AAGGAAGTTGCT
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|213615316|gb|DB963510.1|DB963510
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|209714239|gb|BW665539.1|BW665539
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|209706985|gb|BW683248.1|BW683248
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|209708293|gb|BW683883.1|BW683883
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|120530295|gb|EH258429.1|EH258429
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|213607636|gb|DB958655.1|DB958655
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|15284749|gb|BI468640.1|BI468640
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|37996526|gb|CF808115.1|CF808115
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: CAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|19052738|gb|BM731405.1|BM731405
genomic: CAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|15288232|gb|BI472123.1|BI472123
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|193524670|gb|FK480077.1|FK480077
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|11412830|gb|BF424841.1|BF424841
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|13562529|gb|BG550749.1|BG550749
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|120495797|gb|EH223964.1|EH223964
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|192313436|gb|FK005516.1|FK005516
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|6134078|gb|AW132407.1|AW132407
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|213591868|gb|DB973419.1|DB973419
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|12773440|gb|BG238367.1|BG238367
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|209723920|gb|BW675240.1|BW675240
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|120531769|gb|EH259902.1|EH259902
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTGEST: gi|213587584|gb|DB969725.1|DB969725
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAG GTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatat ... ggtgatgcagGTGCTTATAGTGACTCCCGTGGCCTTCCAGGAGTGAGGAAGGAAGTTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCCATTCCTACTTGATGATCCTAATGTTGGACTGCTATTCCCTGCTGATGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGTGGTTTAGgtattcatatgtcaactactttgttttataacatggtagaattttacatattttgatctgctttaaaagtattgctctgcaaccttagtttttaccctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT