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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttggaaggtgaaacttggttttgatttgaattctgtgtgttcgccatctgatacgatgtttgtttttcag

Basic information

species Glycine max
transcript GLYMA01G43540.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G64440.1 (Arabidopsis thaliana), 5'ss of exon 4
CGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttgg-aaggtgaaacttggttttgatttgaattctgtgtgttcgccatctgatacgatgtttgtttttcag
 || ||||| || || || ||||| ||||| ||||||||||||||||| || ||||||||||  || ||||| | |||||  || |||||||| || ||||||     ||  || || | | | || ||| ||   | ||||  | |  |||   |  ||       |||  | | |  |  |||   ||
TGTATTTTCTTCGTCCGCTACTGTGTATGGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTATGGACGGACAAAGgtac--tcagtcgttttcgatagcaaagtggaa---gcttttattgtagatttgattggtatttatactggaatgtttctcatttcgtag

upper sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G23920.1 (Arabidopsis thaliana), 5'ss of exon 4
CGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttggaaggtgaaacttggttttgatttgaattctgtgtgttcgccatctgatacgatgtttgtttttcag---------------------
 || |||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||  ||  | || || |  ||||||||||| || || ||||||  ||    ||  |  ||    |    |  |    || ||||     |  ||  || |    ||| |  |     | ||  |   |                      
TGTATTTTCATCATCAGCTACTGTCTATGGCTGGCCTAAGGAGGTTCCTTGCACTGAGGAGTCACCAATTTCTGCCACTAACCCATATGGCCGTACAAAGgtagcacctttagcctgagtattgacccaagcccaccttgtgatagtggtgatgaatgataataatcaggaaatgaatctgactgagattatttgcttgtgctgtgtaag

upper sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G10960.1 (Arabidopsis thaliana), 5'ss of exon 4
CGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttggaaggtgaaacttggttttgatttgaattctgtgtgttcgccatctga--tacgatgtttgttttt-cag
 ||||||||||| ||||||||||| ||||| |  ||||| || ||||| || ||||| ||||| ||  | || ||  ||||||||||||||||||| |||||          || ||  |   ||     |  |  || |||   | |||| ||   ||  |  ||||||  ||  |||  |||||||  ||
TGTGTTTTCATCATCAGCAACTGTGTATGGCTCTCCAAAAGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGACGAACAAAGgtt---------gttttcttgacaaaacccacttgagtattgtggttaattatgaa-gtgtga-atctgacttattatggatgtttttgtag

upper sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 4
CGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttggaaggtgaaacttggttttgatttgaattctgtgtgttcgccatctgatacgatgtttg----tttttcag--------------------------------------------------------
 || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| || |  ||    || |||||||||||||| ||||||||  | ||    |     |       |   | ||||  |   |                 ||  | |    ||| ||      ||| ||                                                         
TGTTTTTTCATCATCAGCTACTGTTTATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttgggcaatgaacagaggcaatagtttcggttcaggcatactaaagaaacagattgcacataaaggaatggttagaacctttacaatctgtttcttctttattagcatctgttctaacaactgatgaggttgatcctttcag

upper sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 4
CGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactaggagtgtttgttggaaggtgaaacttggttttg----atttgaattctgtgtgttcgc---catctgatacgatgtttgt--ttttcag--
 || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| || |  ||||  || |||||||||||||||||||||||  | ||    |     |       |   |  |||  |    | |  |        |||| |    ||  | |    |||  |      || |   
TGTTTTTTCATCATCAGCTACTGTTTATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCACTATGTGCAACAAATCCATATGGACGAACTAAGgtatgttttgggaaatgaacagaggcaatattttctgttcaggcatactaaagaaacagatgttggattgcacataaaggaatgactagaacctttaata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713128|gb|BW653837.1|BW653837
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
EST: gi|15000492|gb|BI321306.1|BI321306
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
EST: gi|12489618|gb|BG043139.1|BG043139
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
EST: gi|151398432|gb|EV268303.1|EV268303
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGA-CTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
EST: gi|209699775|gb|BW652120.1|BW652120
EST:     GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAG                         CTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT
genomic: GCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGgtatgactag ... tgtttttcagCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGT