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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGGGAATGGTCTGGATGTGTGGCTAGGCAGACTAGCCATGGTTGGCTTTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgatactattgtacgtgtgaatgttgggaatttcaaaattcagtgtgtttccaagggaacattagctagaagaatttttgcatatccatttacca...

Basic information

species Glycine max
transcript GLYMA20G26560.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G26560.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G34190.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAAGGGAATGGTCTGGATGTGTGGCTAGGCAGACTAGCCATGGTTGGCTTTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgatactattgtacgtgtgaatgttgggaatttcaaaattcagtgtgtttccaagggaacattagctagaagaatttttgcat--atccatttacca-------
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AGGAAGCAGTGGTTTGGATATATGGCTTGGTCGTGGCGCCATGGTTGGTTTTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgta-atcaaac-atcataactgatattgttgcttatataaaagttgaaagtttgagaaatgtaagagaag-tagaataacttaagatttgatttgtcttcttatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6724399|gb|AW308798.1|AW308798
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAAGGACTCCTATAT                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|31309440|gb|CD394643.1|CD394643
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|19269925|gb|BM886181.1|BM886181
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|213598515|gb|DB975946.1|DB975946
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|31312488|gb|CD397691.1|CD397691
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|31308574|gb|CD393777.1|CD393777
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|13479845|gb|BG509188.1|BG509188
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|31470585|gb|CD412613.1|CD412613
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|213588648|gb|DB957670.1|DB957670
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|151400079|gb|EV269893.1|EV269893
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|31474987|gb|CD417015.1|CD417015
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCACTACAGTTGCCCTTGCAGTAACAGC
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGC-CTACAGTTGCCCTTGCAGTAACAGC
EST: gi|213598314|gb|DB979906.1|DB979906
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
EST: gi|26268263|gb|CA819326.1|CA819326
EST:     TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAG                         AACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA
genomic: TTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgata ... tgatttgcagAACTTCGGAGTCCCAACTCCACTGCCTACAGTTGCCCTTGCAGTAACAGCA