Sequence
atgc intronic sequence ATGC exonic sequenceCTTATATGGATTTGTGGTTGAGTTGAATGGCCCTGATCTTTTAAAAGACGAAAGCTCTAGGCAGATACTTGTACCACGAATGAAGAAAGTCCCGAGTAAGgtaaatctattgatgattcaatgctcaatgtgactacatattatatgaagaatgaatttatcagttatattctccaattttattaatccattttaccattgtttacataccag
Basic information
species | Glycine max |
transcript | GLYMA20G16070.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G16070.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0043g00710.t01 (Vitis vinifera), 5'ss of exon 5
CTTATATGGATTTGTGGTTGAGTTGAATGGCCCTGATCTTTTAAAAGACGAAAGCTCTAGGCAGATACTTGTACCACGAATGAAGAAAGTCCCGAGTAAGgtaaatctattgatgattcaatgctcaatgtgactacatattatatgaagaatgaatttatcagttatat-tctccaattttattaatccattttaccattgtt-tacataccag
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TTCATATGGACTCGTGGTTGAGTTAGATGGCCCTGGTCTTTTGAAAGATGAAAGCACTAGACAGTTAATTGTCCCAAGAATGAAAAAACTCCCCAGTAAGgta----ttgaaccgattctat---tagagggaaaata-gtagaacagaatttcgagctattatttctgtgtttttagttctagtcagtcatttttgtgtcttcctttgtagcag
upper sequence: GLYMA20G16070.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g04410.t01 (Vitis vinifera), 5'ss of exon 4
CTTATATGGATTTGTGGTTGAGTTGAATGGCCCTGATCTTTTAAAAGACGAAAGCTCTAGGCAGATACTTGTACCACGAATGAAGAAAGTCCCGAGTAAGgtaaatctattgatgattcaatgctcaatgtgactacatattatatga-agaatg--aatttatcagttatat-tctccaattttattaatccattttaccattgtt-tacataccag
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TTTATATGGACTTGTGGTTGAGTTAGATGGCCCTGGTCTTTTGAAAGATGAGAGCACTAGACAGTTAATTGTCCCAAGAATGAAAAAACTCCCCAGCAAGgtat---------tgaaccaattctattagagaggaaaaatagtagaacagaatttcaagctattgattctgtatttttagttctagttagtcatttttgtgtcttcgtttgtagcag
upper sequence: GLYMA20G16070.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0096g00090.t01 (Vitis vinifera), 5'ss of exon 6
CTTATATGGATTTGTGGTTGAGTTGAATGGCCCTGATCTTTTAAAAGACGAAAGCTCTAGGCAGATACTTGTACCACGAATGAAGAAAGTCCCGAGTAAGgtaaatctattgatgattcaatgctcaatgtgactacatattatatgaagaatgaatttatcagttatat-tctccaattttattaatccattttaccattgtt-tacataccag
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TTCATATGGACTCGTGGTTGAGTTAGATGGCCCTGGTCTTTTGAAAGATGAGAGCACTAGACAGTTAATTGTCCCAAGAATGAAAAAACTCCCCAGTAAGgta----tggaaccgattctat---tagagggaaaata-gtagaacagaatttcgagctattatttctgtgtttttagttctagtcagtcatttttgtgtcttcctttgtagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9440402|gb|BE440908.1|BE440908EST: AAAGCTCTAGGCAGATACTTGTACCACGAATGAAGAAAGTCCCGAGTAAG ATGTTTAGATCCGTTAATCATAACAAAGATTTTGAAGTTTCACTAGCTTAT
genomic: AAAGCTCTAGGCAGATACTTGTACCACGAATGAAGAAAGTCCCGAGTAAGgtaaatctat ... tacataccagATGTTTAGATCCGTTAATCATAACAAAGATTTTGAAGTTTCACTAGCTTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTATATGGATTTGTGGTTGAGTTGAATGGCCCTGATCTTTTAAAAGACGAAAGCTCTAGGCAGATACTTGTACCACGAATGAAGAAAGTCCCGAGTAAGgtaaatctattgatgattcaatgctcaatgtgactacatattatatgaagaatgaatttatcagttatattctccaattttattaatccattttaccattgtttacataccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA