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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAGAGGTTGAATTCGGGAGTCATGGTTGTGGAGCCATCTGCAACTCTTTTTAATGACATGATGAGCAAAATAAAAACTACTGCATCTTACACTGGAGgtaaaaacaaattttgggtacttttatattctattacttttgttcttttgattttgatttttttattttattttattttgtattatttatttttttgttttaaagaccatatatgctagatgttgatttaaacccgatagcttttaacaatggccttcatctgtctttctccctttgacag

Basic information

species Glycine max
transcript GLYMA19G43630.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43630.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g41520.1 (Oryza sativa), 5'ss of exon 3
TCTGAGAGGTTGAATTCGGGAGTCATGGTTGTGGAGCCATCTGCAACTCTTTTTAATGACATGATGAGCAAAATAAAAACTACTGCATCTTACACTGGAGgtaaaaacaaattttgggtacttttatattctattacttttgttcttttgattttgatttttttattttattttattttgtattatttatttttttgttttaaagaccatatatgctagatgttgatttaaacccgatagcttttaacaatggccttcatctgtctttctccctttgacag
||||| ||| ||||||| ||||| |||||||| |||||||||| ||||||||| ||||||||||||  |||| |||| | |    | |||||||| |||||| |  ||||   || | |||||         |  |   |||||||||        || |  |||| |  ||||  ||       || |  | ||||     || |    ||                                                                     
TCTGAAAGGATGAATTCTGGAGTAATGGTTGTAGAGCCATCTGAAACTCTTTTCAATGACATGATGGACAAAGTAAACAGTTTACCTTCTTACACAGGAGgttagtacaa---ttcgttactt---------agcatgcttgttctttctggggctatatacttatat-gtttttcttaactgggttgaactatttgacagcaaaatttcatt--------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213620033|gb|DB965367.1|DB965367
EST:     TTTTAATGACATGATGAGCAAAATAAAAACTACTGCATCTTACACTGGAG                         GCGATCAAGGATTTCTCAATTC
genomic: TTTTAATGACATGATGAGCAAAATAAAAACTACTGCATCTTACACTGGAGgtaaaaacaa ... cctttgacagGCGATCAAGGATTTCTCAATTC