Sequence
atgc intronic sequence ATGC exonic sequenceTGACCTCCTTTCTGGATTCATCCTCTGGTTCACTGCATTTTCCATGCAAACACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttcttctaattaatattctgtttgaaactatctgaatcatcgtcttctgttcttgcctattgataggatttcagtgactcttaggagttacttaa...
Basic information
species | Glycine max |
transcript | GLYMA18G52280.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G52280.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G39450.1 (Arabidopsis thaliana), 5'ss of exon 3
TGACCTCCTTTCTGGATTCATCCTCTGGTTCACTGCATTTTCCATGCAAACACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttcttctaattaatattctgtttgaaactatctgaatcatcgtcttctgttcttgcctattgataggat-ttcagtgactcttaggag--ttacttaa-------------------------------------------------------------------------------------------------
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TGATCTTCTTTCTGGCTTCATCCTCTGGTTTACCGCCTTCTCCATGCAGACACCCAACCCGTATCAGTATCCCATTGGCAAGAAACGCATGCAACCACTGgtttgtatcatccttttaaagactaatgcacatgatctgtcttccattagtatatttctattatatgttatgttattgaatcggcctaagcaagcttgttttctgctattgatatctctgtgcaactattaacaccttcgacaagtcaataaagtttttccgatttctcaatatgtgatttttggttcaaatcctttcag
upper sequence: GLYMA18G52280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g00020.t01 (Vitis vinifera), 5'ss of exon 3
TGACCTCCTTTCTGGATTCATCCTCTGGTTCACTGCATTTTCCATGCAAACACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttcttctaattaatattctgtttgaaactatctgaatcatcgtcttctgttcttgcctattgataggatttca---gtgactcttaggagttacttaa
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TGATCTTCTTTCTGGCTTCATTCTGTGGTTTACTGCATTTTCCATGCAAACACCGAACCCATATCAGTACCCCATTGGAAAGAAACGTATGCAGCCATTGgtcagtaattctg-caattattc--attatagtgatcagatgcatatatctaaattcatataaacctatgtagttctacatgcaacttgacaagttcacttaa
upper sequence: GLYMA18G52280.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S11_299V6.2 (Physcomitrella patens), 5'ss of exon 4
TGACCTCCTTTCTGGATTCATCCTCTGGTTCACTGCATTTTCCATGCAAACACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttcttctaattaatattctgtttgaaactatctgaatcatcgtcttctgttcttgcctattgataggatttcagtgactcttaggagttacttaa-
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AGACCTACTTTCTGGTTTCATTCTCTGGTTCACTGCAATTTCTATGCGCAAGCAGAACCCCTATCTCTATCCAATTGGCAAGAAGCGGATGCAGCCTCTGgtacgtccactacggtcttttctcatgtctaact-tctgaatgcctgtgaggagagagctggaattttcataccagggaaacctgtatggagtttcagatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151393928|gb|EV263799.1|EV263799EST: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTG GGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
genomic: CACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttctt ... tttggtacagGGAATTCTTGTTTTTGCCTCTGTTATGGCGACACTTGGACTGCAGATAATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACCTCCTTTCTGGATTCATCCTCTGGTTCACTGCATTTTCCATGCAAACACCAAACCCATATCAGTACCCTATAGGAAAGAAACGGATGCAACCATTGgtcagttcttctaattaatattctgtttgaaactatctgaatcatcgtcttctgttcttgcctattgataggatttcagtgactcttaggagttacttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA