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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagtctttaatttttcattcagcttctcaggactctgtggcttgatttatggtgtgacgctgtctgtcaacgtgaataagttttggtgtggtatggtgtgcttgattaagtaattctgcagttgtggtttgataaatttgatggctataatgcagg

Basic information

species Glycine max
transcript GLYMA18G04360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G04360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 3
-GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagtctttaatttttcattcagcttctcagg---actctgtggcttgattta-tggtgtgacgctgtctgtcaacgtgaataagttttggtgtggtatggtgtgcttgattaagtaattctgcagttgtggtttgataaatttgatggctataatgcagg
 | || ||||| || ||||| || ||||| || |||||||| ||||| | |||||| ||||| || || || || |||||||| ||||||||||| |      | ||       ||| |||| | || || |   | ||| || |     | | |  |     | | | |   | |                                                                                     
GGATACGTTGGCAACAAATCAGCAGTCTTTCCCCTGCAACTCCTGGGCTTTGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGgtagaggtgggctgcg---cttcgttcaacatcgcacgtgcaatctttgacacacctgaataattccctgttatttcatatcccag---------------------------------------------------------------------------------

upper sequence: GLYMA18G04360.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G069758_T02 (Zea mays), 5'ss of exon 4
-GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagtctttaatttttcattcagcttctcaggactctgtggcttgatttatggtgtgac-gctgtctgtcaacgtgaataagttttggtgtggtatggtgtgcttgattaagtaattctgcagttgtggtttgataaatttgatggctataatgcagg
 |||||||||| || ||||| || ||||| || ||||| || || || | |||||| |||||||| || || || |||||||| ||||||||||| ||    |     |   | | ||  ||   ||  |  | ||  | |    |  ||     |  | | ||| ||| | |                                                                                     
GGGTATGTTGGCAACAAATCGGCCGTCTTTCCCCTGCAGCTCCTTGGCTTTGATGTGGATCCAATAAACTCTGTACAGTTTTCTAATCATACAGgtaaatgtatatcgtggatgtaca--caatctcgtacaattcacttgggacacataaacaattccagttgtgtgttatctcag---------------------------------------------------------------------------------

upper sequence: GLYMA18G04360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 3
-GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagtctttaatttttcattcagcttctcaggactctgtggcttgatttatggtgtgacgctgtctgtcaacgtgaataagttttggtgtggtatggtgtgcttgattaagtaattctgcagttgtggtttgataaatttgatggctataatgcagg
 | ||||||||||| ||||| |||||||| ||||| ||| |  |||| |||||||| |||||||| || || || || || |||||||||||||| ||  |  |     | |     ||  ||   || | |   |||    |  | |  ||  ||  |   || | |    ||   | | | |     || | |||  |   |  | ||    || | |||                                   
GGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAATTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGgtaatatttggtcacagta----atgtagagcctaatgttcctgaaatt--actgttgtcgtatcttcgt-tattggtgtatctgaatctac---tgatttggcat---tactaaaacttttttccag-----------------------------------

upper sequence: GLYMA18G04360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 3
-GGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAACTACTGGGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagtctttaatttttcattcagct--tctcaggactctgtggcttgatttatggtgtgacgctgtctgtcaacgtgaataagttttggtgtggtatggtgtgcttgattaagtaattctgcagttgtggtttgataaatttgatggctataatgcagg
 | |||||||| |||||||| |||||||| || || || |||||||| ||||||||||||||||| ||||| || ||||| || ||||| ||||||||||||      | ||  |||| |||     |||||| ||||||  || |||  ||||||| || |    ||| |||  |  || ||||  ||  ||  ||  |       ||| ||      |  | || ||||| |  || ||  ||  ||    ||||| 
GGATATGTTGGCAATAAATCGGCTGTCTTTCCCCTCCAGCTACTGGGCTATGATGTCGATCCAATCAATTCAGTACAGTTCTCAAATCACACAGgcaagctg-----cttatacttcactcaaacagtctcagaactctgaagcctgaaatatggtgcgaggtcaactgccaatctatatgagttcaggcatgagatcctagtagcaattgagg-----ttaaattatggttagtcaacttgaatatct----tgcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401899|gb|EV271712.1|EV271712
EST:     GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG                         ATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
genomic: GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagt ... ataatgcaggATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
EST: gi|192332257|gb|FK023906.1|FK023906
EST:     GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG                         ATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
genomic: GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagt ... ataatgcaggATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
EST: gi|298186757|gb|HO037390.1|HO037390
EST:     GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG                         ATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
genomic: GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagt ... ataatgcaggATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
EST: gi|213600856|gb|DB958434.1|DB958434
EST:     GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG                         ATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
genomic: GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagt ... ataatgcaggATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
EST: gi|7684914|gb|AW755562.1|AW755562
EST:     GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG                         ATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
genomic: GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagt ... ataatgcaggATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
EST: gi|27423806|gb|CA935326.1|CA935326
EST:     GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG                         ATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
genomic: GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagt ... ataatgcaggATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
EST: gi|298188142|gb|HO032099.1|HO032099
EST:     GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG                         ATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
genomic: GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagt ... ataatgcaggATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
EST: gi|213588703|gb|DB957697.1|DB957697
EST:     GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGG                         ATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT
genomic: GGATATGATGTCGATCCAATTAATTCCGTGCAGTTTTCGAATCATACAGGcaagctgagt ... ataatgcaggATATCCGACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCT