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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatatggttattctgaatccatttttctaccttttttttttaaaaaaaaaaattggtagttatgctttatggccgagtaatgaattggggactttttttgtgtgtgtgaatggaag

Basic information

species Glycine max
transcript GLYMA17G15010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15010.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0154g00500.t01 (Vitis vinifera), 5'ss of exon 3
GTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatatggttattctgaatccatttttctaccttttttttttaaaaaaaaaaattggtagttatgctttatggccgagtaatgaattggggactttttttgtgtgtgtgaatggaag
||||||||||| ||||||||||||||||||||||||||||| || ||  |||||  |||||| || || |||||  |  | |||||| | |  | |     || |   ||||   |  |||  |||||  ||  |    || ||  ||    | ||||   |  | |||   ||  || |                       
GTGAAAACAACGAATCCGAAGAAGTATTGTGTTCGTCCGAATACCGGAATTGTCTTGCCTCGGTCGACATGTGACATCTTAGgtacttacagagat-----gattttgttttgggatttttggtttttgcaattag---tttgtgatttctttatatgtttgttttatg--ctgttgattcag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193525054|gb|FK480167.1|FK480167
EST:     TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG                         TTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
genomic: TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatat ... tgaatggaagTTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
EST: gi|151393590|gb|EV263465.1|EV263465
EST:     TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG                         TTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
genomic: TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatat ... tgaatggaagTTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
EST: gi|151400266|gb|EV270080.1|EV270080
EST:     TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG                         TTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
genomic: TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatat ... tgaatggaagTTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
EST: gi|192308379|gb|FK000903.1|FK000903
EST:     TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG                         TTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
genomic: TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatat ... tgaatggaagTTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
EST: gi|192320145|gb|FK012633.1|FK012633
EST:     TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG                         TTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
genomic: TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatat ... tgaatggaagTTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
EST: gi|298168811|gb|HO009741.1|HO009741
EST:     TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG                         TTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
genomic: TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatat ... tgaatggaagTTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
EST: gi|18721259|gb|BM523334.1|BM523334
EST:     TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCG                         TTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA
genomic: TCGTCCGAACACTGGGGTTGTCACGCCTCGATCTACGTGTGATGTTATCGgtactaatat ... tgaatggaagTTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATA