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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTTGGGGGAAAATTTCTATGGTTGATGCAGAGAGACGACTATTGGCAAATGCCCTTCAAGATACTGACAACCAGCAATTTGTTCTACTGTCTGATAGgtaaaccgtaaatgtgttatgacttatgagattgcttttaattttgttcctacttattaattagttttaggcttaaatatgtatttagtctctacaaata...

Basic information

species Glycine max
transcript GLYMA17G06790.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G06790.4 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G057567_T01 (Zea mays), 5'ss of exon 5
TGATTTGGGGGAAAATTTCTATGGTTGATGCAGAGAGACGACTATTGGCAAATGCCCTTCAAGATACTGACAACCAGCAATTTGTTCTACTGTCTGATAGgtaaaccgtaaatgtgttatgacttatgagattgcttttaattttgttcctacttattaattagttttaggcttaaatatgtattta-gtctctacaaata
| | |||||| |||||||||||||||||||| |||||  |  |  |||||||||| || ||||||| |||||| ||||| |||||| | || ||||||||||| |         | | |||  ||    | || | |   ||||| || |     |||  ||  ||   | ||| | | | | |||  || | | ||    
TAACTTGGGGTAAAATTTCTATGGTTGATGCTGAGAGGAGGTTGATGGCAAATGCTCTACAAGATATTGACAATCAGCATTTTGTTTTGCTATCTGATAGgtaca---------tatcatggtttt---gctttcatcccattttatttca--caatttgttctttcaggtctttactttttttttgcgtgtttgcag---

upper sequence: GLYMA17G06790.4 (Glycine max), 5'ss of exon 3
lower sequence: AT5G57270.2 (Arabidopsis thaliana), 5'ss of exon 4
TGATTTGGGGGAAAATTTCTATGGTTGATGCAGAGAGACGACTATTGGCAAATGCCCTTCAAGATACTGACAACCAGCAATTTGTTCTACTGTCTGATAGgtaaac-cgtaaatgtgttatgacttatgagattgcttttaattttgttcctacttattaattagttttaggcttaaatatgtatttagtctctacaaata
| | |||||| |  ||||||||||||||||| |||||||| ||  | |||||||| ||| ||||| |||| |||||||| |||||||| || || || |||| |   | ||||  | ||  || ||   | |  |   ||| |||  || | |  ||    ||   ||||   | |  ||| | |||      | ||    
TCACTTGGGGAAGGATTTCTATGGTTGATGCTGAGAGACGGCTTCTAGCAAATGCTCTTGAAGATCCTGATAACCAGCACTTTGTTCTTCTTTCAGAAAGgttatttcataaacttatt--gaatttgcacaaagtcattactttaatttccagctac--gttctgtttac-ttgatgtatctcttttaatgttgcag---