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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaattgtttttctttgtttgacactgacatatatgagtttgcctggttgccttttatgagattggtttgaatttatttattatgtaatttaat...

Basic information

species Glycine max
transcript GLYMA16G28200.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28200.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0072g00630.t01 (Vitis vinifera), 5'ss of exon 2
CCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaattgtttttc-tttgtttgacactga---catatatgagtttgcctggt--tgccttttatgagattggtttgaatttatttattatgtaatttaat
    |  |  ||||||||||||| ||||| ||||| ||||| ||||| || ||  |||| |||||||| |||||||| ||||| |||||||||      | |      |||||||| | ||||   | | || |  |||    ||   || ||||| |  |  || | || ||       | || |||      
----GGCCTCGGGATGGAACCATTCAGTGCTTCATTAAGAGGGACAAGTCCAACTTGACTTACCACCTTTTCCTTTGCCTTAGCCCTGgtaagattctctctcaacggtttgtttgccgctgattccttttacggattttatgggacatgacttttgttgggctgatgtggatcacaaattaatataa------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193637880|gb|FK585738.1|FK585738
EST:     CTGACGTACCACC-ATTCCTTTGTCTTAGTCCTG                         CATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
genomic: CTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaa ... gtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
EST: gi|151394298|gb|EV264169.1|EV264169
EST:     GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTG                         CATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
genomic: GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaa ... gtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
EST: gi|254340191|gb|GR858316.1|GR858316
EST:     GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTG                         CATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
genomic: GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaa ... gtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
EST: gi|192295189|gb|FG986908.1|FG986908
EST:     GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTG                         CATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
genomic: GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaa ... gtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA