1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAGAGTACTCCATTTAATTCTTTGGAGACAGAAAATTTGAAATATCTTTCGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctacattgttttgctgtcgtagttgttatagaacaacttggtagaaatgaagctagtaaaatagtaatctaagaaattttgtagaaaaaagtttg...
species | Glycine max |
transcript | GLYMA16G24290.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAG GACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTCEST: gi|298173654|gb|HO016990.1|HO016990
genomic: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctaca ... ttttatgtagGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTC
EST: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAG GACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCEST: gi|19053252|gb|BM731919.1|BM731919
genomic: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctaca ... ttttatgtagGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCC
EST: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAG GACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTCEST: gi|17153445|gb|BM143378.1|BM143378
genomic: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctaca ... ttttatgtagGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTC
EST: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAG GACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTCEST: gi|192295160|gb|FG986879.1|FG986879
genomic: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctaca ... ttttatgtagGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTC
EST: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAG GACTCCATAAATGCAAAGCTTAATAGAGCAAAAATTGAAAACCCCTGGTTCEST: gi|19348837|gb|BM893369.1|BM893369
genomic: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctaca ... ttttatgtagGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTC
EST: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAG GACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAAEST: gi|207688111|gb|GD673739.1|GD673739
genomic: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctaca ... ttttatgtagGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAA
EST: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAG GACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTCEST: gi|254323220|gb|GR840025.1|GR840025
genomic: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctaca ... ttttatgtagGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTC
EST: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAG GACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTC
genomic: CGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctaca ... ttttatgtagGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAGTACTCCATTTAATTCTTTGGAGACAGAAAATTTGAAATATCTTTCGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGgcaagctacattgttttgctgtcgtagttgttatagaacaacttggtagaaatgaagctagtaaaatagtaatctaagaaattttgtagaaaaaagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaaa