1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCTACTGCTGGATCTCTCAGGCCTATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgacttattctgaccccattcttgcaaaagcaactgttatgagttatgacttgctatggatcattcattggtggggtaatacaataggcttgac...
species | Glycine max |
transcript | GLYMA16G17370.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGTAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298171485|gb|HO016517.1|HO016517
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298190321|gb|HO032442.1|HO032442
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAGGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298187819|gb|HO031776.1|HO031776
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298188828|gb|HO035521.1|HO035521
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298176033|gb|HO015438.1|HO015438
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTGTTGGGATTTCTGTTGATEST: gi|298174537|gb|HO017760.1|HO017760
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|193366313|gb|FK333688.1|FK333688
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: GGGAGAGGATTTTCACCGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|209713134|gb|BW653843.1|BW653843
genomic: GGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298199481|gb|HO042844.1|HO042844
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298184300|gb|HO029513.1|HO029513
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGGATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTGTTGGGATTTCTGTTGATEST: gi|18038779|gb|BM307073.1|BM307073
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298191196|gb|HO038675.1|HO038675
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|26269595|gb|CA820658.1|CA820658
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298186766|gb|HO037399.1|HO037399
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298189983|gb|HO032104.1|HO032104
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298184392|gb|HO029605.1|HO029605
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298189992|gb|HO032113.1|HO032113
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAGG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|17963591|gb|BM270338.1|BM270338
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298170572|gb|HO019196.1|HO019196
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAT GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298169024|gb|HO020384.1|HO020384
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAGGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|213594019|gb|DB961935.1|DB961935
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298175316|gb|HO015975.1|HO015975
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGTGACTTCTGTTGATEST: gi|298185009|gb|HO030222.1|HO030222
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGGAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTCGATEST: gi|23726992|gb|BU761509.1|BU761509
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298198943|gb|HO042306.1|HO042306
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298183645|gb|HO028858.1|HO028858
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAGACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|208081632|gb|GD882060.1|GD882060
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|20498416|gb|BQ273346.1|BQ273346
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298168564|gb|HO009494.1|HO009494
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|209718652|gb|BW662730.1|BW662730
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|298170562|gb|HO019186.1|HO019186
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTACTGCTGGATCTCTCAGGCCTATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgacttattctgaccccattcttgcaaaagcaactgttatgagttatgacttgctatggatcattcattggtggggtaatacaataggcttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG