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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtcccctcaatagatggactttgttgttctttgagaattaaggagatgttagtctcatcatcgcagttttgtaattgtag

Basic information

species Glycine max
transcript GLYMA16G15820.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g08360.1 (Oryza sativa), 5'ss of exon 7
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtcccctcaatagatggactttgttgttctttgag----aattaaggagatg-ttagtctcatcatcgcagttttgta-attgtag
 || || ||||| || || || | ||| |||||||||||||||||||||||||| ||||| ||||| || ||  | |||||||| ||||| || || |||||  |  |    |  ||||        ||||||  |   | ||    | || |    ||| |||   | ||  | ||| | |  || ||   ||
ACTACCAGATGAATTAGATCCCATTGGGAAACTTCCAGGATCATTTGATGATGGGGATCCACAAACCACGAACTTATATGTTGGGAATCTTTCTCCTAAGgttggcat---tctccaatgcgcttgttttgtttatacataaggttaactttacatcatgattaacttgatggttgcattatattatatgacag

upper sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G133308_T02 (Zea mays), 5'ss of exon 7
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtcccctcaatagatggactttgttgttctt-tgagaattaaggagatgttagtctcatcatcgcagttttgtaattgtag
 || || ||||| ||||| || | ||| | | |||||||||||||||||||||||||||||||||| || ||  | |||||||| ||||| || ||||||||     ||    |||    |   |  || |||   ||| |  | |||   |   ||||||  | | ||| ||  |  ||| |      
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgt-----tgctttctctgctgtgcggtttagttaaacttgtatgcatt---gtcttgttagcttta-cat-gctatggtgttag-----

upper sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G174785_T01 (Zea mays), 5'ss of exon 7
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtcccctcaatagatggactttgttgttctt-tgagaattaaggagatgttagtctcatcatcgcagttttgtaattgtag
 || || ||||| ||||| || | ||| | | |||||||||||||||||||||||||||||||||| || ||  | |||||||| ||||| || ||||||||     ||    |||    |   |  ||  ||   ||| |  |  ||   |   ||||||  | | ||| ||  |  ||| |      
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgt-----tgctttctctgctgtgcggtttcattaaacttgtatgcgtt---gtcttgttagcttta-cat-gctatggtgttag-----

upper sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtc--ccctcaatagatgga--ctttgttgttctttgagaattaaggagatgttagtctcatcatcgcagttttgtaat-tgtag-------------
|||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||  ||||   | |        |     | |  |  || |||| |||||| |   || |       || | |     | |       | |||| |||               
GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag

upper sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ16538 (Selaginella moellendorffii), 5'ss of exon 5
---GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtcccctcaatagatggactttgttgttctttgagaat-taaggagatgttagtctcatcatcgcagttttgtaattgtag
   ||| || || ||    || || |  || || ||||| ||||| ||||||||||||||||| || || || ||||| || |||||||||||||||||  |||| |        | || ||   |   | || |   ||||     || ||   |     | || |||                       
CGAGCTTCCCGAAGAA---GATCCGAACGGCAAGCTTCCTGGATCGTTTGATGATGGTGATCCACAGACGACCAATCTCTACGTTGGAAATCTCTCACCGCAGgtaaag------cttctatgttttctcgttctctctcttgatatatatatatatgcactggtttcag----------------------

upper sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ32251 (Selaginella moellendorffii), 5'ss of exon 5
---GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtcccctcaatagatggactttgttgttctttgagaat-taaggagatgttagtctcatcatcgcagttttgtaattgtag
   ||| || || ||    || || |  || || ||||| ||||| ||||||||||||||||| || || || ||||| || |||||||||||||||||  |||| |   |      |       |   || | ||| | | |    || ||   |     | || |||                       
CGAGCTTCCCGAAGAA---GATCCGAACGGCAAGCTTCCTGGATCGTTTGATGATGGTGATCCACAGACGACCAATCTCTACGTTGGAAATCTCTCACCGCAGgtaaagcttctatgttttctcgttctctctcttgatatatatatatatatatatgcactggtttcag----------------------