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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTGGATATGCGCATAGCAGTTGGATTTGCTCTCGATATTGCCCGTGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGgtattgtataagattgtcaaacttgccagtttttgttgaattttagttggtagctcataatccaaaagatttagacttggctagagtttggtgaaatttt...

Basic information

species Glycine max
transcript GLYMA16G07490.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G07490.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G165231_T01 (Zea mays), 5'ss of exon 3
TGTTTGGATATGCGCATAGCAGTTGGATTTGCTCTCGATATTGCCCGTGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGgtattgtataagattgtcaaacttg-ccagtttttgttga--attttagttggtagc--tcataatccaaaagatttagacttggctagagtttggtgaaatttt
 |  | ||    ||  ||||||| || |||||  | || |||||||| || ||||||||||||||  | |||||||||||||| ||||| ||||| |||||||         ||| |   |  ||  || |   || |    || ||| |   |     ||   ||    |  || |   | | | ||   | |   |||     
AGCCTTGAGCCTCGTGTAGCAGTGGGGTTTGCATTGGACATTGCCCGAGCTATGGAATGCTTACATGCACATGGGATCATTCATCGTGATCTTAAGCCTGgtaagactagtcattttgtgatctgatcattgcatgctatctatattattcactgcttttctccatgtttaccatgtgtccgtcgttactttcttcggaa-----

upper sequence: GLYMA16G07490.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g09290.t01 (Vitis vinifera), 5'ss of exon 3
TGTTTGGATATGCGCATAGCAGTTGGATTTGCTCTCGATATTGCCCGTGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGgtattgtataagattgtcaaacttgccagtttttgttgaattttagttggtagctcataatccaaaagatttaga--cttggctagagtttggtgaaatttt-----
|| ||||||   || || |||||||| |||||||| |||||||| || |||||||||||| | ||||||||||||||||| || ||||| || ||||||||||   | |    ||   | ||      |  ||    |||| |   || | |  | || |  |||  | ||| ||  ||    ||||  |   ||  |         
TGCTTGGATGCTCGAATTGCAGTTGGTTTTGCTCTTGATATTGCTCGAGCAATGGAATGCCTGCACTCTCATGGGATCATACATCGTGATCTGAAACCTGgtaagcttt----ttagaagacccctttgaattcagagaatatc--ttag-atttaattagacaagggttttggattctcaaatagacctcactgggaaaacaggca