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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAACAATGGCAGCAGCTGATGAAGCTGAACATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttggcttgaattttccctatattttcctatcttttgctcaacaatattgtttaccaaattagaaaataagataatcttatccctgctgaattac...

Basic information

species Glycine max
transcript GLYMA16G06700.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06700.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g05950.t01 (Vitis vinifera), 5'ss of exon 2
TTTCAACAATGGCAGCAGCTGATGAAGCTGAACATGGCCTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttggcttgaattttccctatattttcctatcttttgctcaacaatattgtttaccaaattagaaaataagataatcttatccctgctgaattac----
|| ||||||| ||  |  | ||||| ||||||||||||||||||||||||| |||||||||||||||||  || ||||| ||||||||||| || ||||||||||    | ||  || ||   |    | |       | |    || | | |  || |    | |   | | ||   ||  |     |    |  || |    
TTGCAACAATAGCTTCTTCAGATGAGGCTGAACATGGCCTGGCATGTCCAAACTATCCATGGCCTCACAGCGGCATTCTCAGTTCATATGACCATGCTTCgtaagc--agattacatcttatgttatctattacgcaatctatagaaaagtgtc-ttgataggactttgaga-aactaaacatcggttcaaaggccttcccttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326638|gb|FK018855.1|FK018855
EST:     AGCTATCCATGGCCTCGCAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
EST: gi|213597044|gb|DB966353.1|DB966353
EST:     AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
EST: gi|17023748|gb|BM094782.1|BM094782
EST:     AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
EST: gi|192306424|gb|FG997164.1|FG997164
EST:     AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCATGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
EST: gi|192324650|gb|FK018746.1|FK018746
EST:     AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
EST: gi|254314651|gb|GR829644.1|GR829644
EST:     AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
EST: gi|209723017|gb|BW668861.1|BW668861
EST:     AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
EST: gi|151408312|gb|EV278120.1|EV278120
EST:     AGCTATCCATGGCCTCGCAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
EST: gi|151401029|gb|EV270843.1|EV270843
EST:     AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
EST: gi|151408267|gb|EV278075.1|EV278075
EST:     AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTC                         GATTCGTCGTGGTCATCGAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC
genomic: AGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCACGCTTCgtaagtttgg ... tcatgggcagGATTCGTCGTGGTCATCAAGTTTATACAGAAGTCTGTGCTTCCTGCCATTC