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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGACTGAGATGGCTGGAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccactggctctcacttcatgataattggatgcttttgcacttaattgcctttttaggtccttatatgttttcatgacctataatggagatcctta...

Basic information

species Glycine max
transcript GLYMA16G06700.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723017|gb|BW668861.1|BW668861
EST:     GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT                         AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCT
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: gi|192326638|gb|FK018855.1|FK018855
EST:     GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT                         AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCT
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: gi|17023748|gb|BM094782.1|BM094782
EST:     GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT                         AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCT
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: gi|192306424|gb|FG997164.1|FG997164
EST:     GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT                         AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCT
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: gi|192324650|gb|FK018746.1|FK018746
EST:     GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT                         AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCT
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: gi|151408312|gb|EV278120.1|EV278120
EST:     GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT                         AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCT
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: gi|151401029|gb|EV270843.1|EV270843
EST:     GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT                         AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCT
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTGACTGAGATGGCTGGAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccactggctctcacttcatgataattggatgcttttgcacttaattgcctttttaggtccttatatgttttcatgacctataatggagatcctta

- - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - -  GGAGGA