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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCTTCTTGTTCGGAAATCAATTCCAAATGGACTAGTTTTTGTCGGAGAATTGCCTTATGGATCTAACAGTAATTTCAGCCCAAAAATGGATCACCTGgtatgcagtactttctaattttcaagtttggcattgcatacaaatattttgtgctacagtagttgcttgagaatatcattaagtagaaatagtgcaaaag...

Basic information

species Glycine max
transcript GLYMA15G10130.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10130.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 3
ACATCTTCTTGTTCGGAAATCAATTCCAAATGGACTAGTTTTTGTCGGAGAATTGCCTTATGGATCTAACAGTAATTTCAGCCCAAAAATGGATCACCTGgtatgcagtactttctaatt--ttcaagtttggcattgcatacaaatattttgtgctacagtagttgcttgagaatatcattaagtagaaatagtgcaaaag--
 || |||||||||| |||||| || ||||| ||| | |||||||| || ||||| |||| |||||||||  ||  ||| || |||||||||||||||||||||||  || | || ||| |  || |||||   |  | || |  |  | | |  | ||   | | | ||| |     |  | |  |    | | |   |||   
GCACCTTCTTGTTCAGAAATCTATCCCAAAGGGATTGGTTTTTGTTGGGGAATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTGgtatgtggttcgttttaactactttaagttaatctgttcaaa-gatcaatctaggtta---tggctacttaatttgtttttgagatcaggagattaagaaacag