1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTAGAAAAGAAGACATGAATAAGTTGGTAATGAATTTCCTCGTCACTGAAGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatccttttttttaatctatttatttgtttatttttgggtctatgagtgcaagagattgtattctttatccagctatgattttccttattgatctacagcag
species | Glycine max |
transcript | GLYMA15G07570.3 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC CEST: gi|298181140|gb|HO022579.1|HO022579
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC CEST: gi|192297765|gb|FG989971.1|FG989971
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC CEST: gi|192297765|gb|FG989971.1|FG989971
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC CEST: gi|193719536|gb|FK650872.1|FK650872
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
EST: CTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCC AEST: gi|193719536|gb|FK650872.1|FK650872
genomic: CTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAG-Cgtatcctttt ... tctacagcag-
EST: CTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCC AEST: gi|193719536|gb|FK650872.1|FK650872
genomic: CTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAG-Cgtatcctttt ... tctacagcag-
EST: CTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCC AEST: gi|8283127|gb|BE020688.1|BE020688
genomic: CTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAG-Cgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAAC ACATAGCTCTTGCAEST: gi|15812571|gb|BI784846.1|BI784846
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcagACATAGATCTTGCA
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCC AEST: gi|15812571|gb|BI784846.1|BI784846
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAG-Cgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCC AEST: gi|15812571|gb|BI784846.1|BI784846
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAG-Cgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCC AEST: gi|151408269|gb|EV278077.1|EV278077
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAG-Cgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC CEST: gi|151408269|gb|EV278077.1|EV278077
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC CEST: gi|207765821|gb|GD735462.1|GD735462
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC CEST: gi|207765821|gb|GD735462.1|GD735462
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC CEST: gi|9819896|gb|BE555339.1|BE555339
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC CEST: gi|9819896|gb|BE555339.1|BE555339
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
EST: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGC C
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatcctttt ... tctacagcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAGAAAAGAAGACATGAATAAGTTGGTAATGAATTTCCTCGTCACTGAAGGCTATGTTGAAGCTGCTGAGAAATTCCGAATGGAGTCTGGAACTGAGCgtatccttttttttaatctatttatttgtttatttttgggtctatgagtgcaagagattgtattctttatccagctatgattttccttattgatctacagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT