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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttggtttggctcatttttatttttatcttgctttgattgatacatgataatgaatgatgctgttccatttgcag

Basic information

species Glycine max
transcript GLYMA15G04470.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04470.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 3
TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttgg--tttggctcat-----ttttatttttatcttgctttgattgatacatgataatgaatgatgctgttccatttgcag---------
||| || || |  |||||||| || |||||||| ||||  || |||||||| || ||||||||||| | ||||||||| ||  | |||||||| ||||||  |  |||   |  |     || ||||| | |  | | |     | |   |  |     || ||||  |   |||||  |         
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgc-ataatatttgaggaaacgccag

upper sequence: GLYMA15G04470.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 5'ss of exon 3
TGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttggtt--tggctcatttttat---ttttatctt--gctttga---ttgatacatgataatgaatgatgctgttccatttgcag-------
||| |||||||||||||||||||| ||||||||||||||||| || || || ||||| ||| ||||||| ||||| |||||  | ||||||||||||||||||||  | |  ||  |  ||   ||| || ||   || | |   |||   ||||      ||| |   || | | |             
TGATGGGGGATTTTTCAATGCCATCATGAGCTTTCCACCCAATTATCCGAACAGTCCTCCAACAGTGAAGTTTACTTCAGAAGTGTGGCATCCCAATGgttggttgtttgtccaactgcatgtgtttgatttttgactcttaccattggagcatggcttgaaatcaacttggttcttgcatgaattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336753|gb|GR842932.1|GR842932
EST:     AAATAGTCCGCCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATG                         TGTACCCCGATGGGCGAGTTTGCATATCAATTCTTCATCCACCCGGTGATG
genomic: AAATAGTCCGCCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGgttggtttgg ... ccatttgcagTGTACCCCGATGGGCGAGTTTGCATATCAATTCTTCATCCACCCGGTGATG