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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGTAGGGATATTCTGgtaacatgacttctgttatattacttgatgatgaaatctcaattttctaattccttcttttggtttattctttcctattttatgtgattttagcttactt...

Basic information

species Glycine max
transcript GLYMA14G02210.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02210.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 5
AGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGTAGGGATATTCTGgtaa--catgacttctgttat--attacttgatgatgaaatctcaat-tttctaattccttcttttggtttattctttcctattttatgtgattttagcttactt
||||||||||    |||||||| |||||||| ||||||||| |    || ||| | |||||||| |||||||| || |||||||||| ||||||||||||||||   ||   |||  ||||  || || || |  |  | | ||||  ||| |      |       | |||    ||  | ||   | |   ||   | |    
AGTATCAGTTCAAACAGTATGCCTGGACACACATGATACTTTTAACAGTTTTTGCACAGTCTGCTTTCACTGTGGCAAACATATTTGAAGGGATATTCTGgtaagtgattcgttcctttatgaataacctgtt--tagagtttcaacatttttgggatatatggagtgcttagctatttttgttcagtttaggttagacatg---

upper sequence: GLYMA14G02210.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G825110_T01 (Zea mays), 5'ss of exon 5
AGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGTAGGGATATTCTGgtaacatgacttctgttat-----attacttgatgatgaaatctcaatt--ttctaattccttcttttggtttattctttcctattttatgtgattttagcttactt
|||| |||||    |||||||| ||||| || ||||||||| |    || ||| | |||||||| |||||||| || |||||||||| ||||||||||||||||  ||| || | || |     || || || |  |  | | |||| |  ||   ||    |     | ||   | |||  | ||   | |   || | | |    
AGTACCAGTTCAAACAGTATGCCTGGACGCACATGATACTTCTAACGGTTTTTGCACAGTCTGCTTTCACTGTGGCAAACATATTTGAAGGGATATTCTGgtaa-gtgatttgtttttttgagaataacctgct--tagagtttcaactagttgggataatgtggagcgcttagcttttttttgttcagtttaggttaaacat----

upper sequence: GLYMA14G02210.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 4
AGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGTAGGGATATTCTGgtaacatgacttctg--------ttatattacttgatgatgaaatct-caattttctaattccttcttttggt-ttattctttcctattttatgtgattttagcttactt
||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |||||  | || | ||||| ||| || |||| |||||| ||||||||| | ||||| ||        |||| || | || | |||  ||||   ||| | |||||||   | ||  | | |||  |   | ||||  |||  |           
AGTATCAATTTGGCCAGTATGCATGGACACACATGATTCTTATTGTGGTGTTCACGCAGTCCTCATTTATTGTAGGCAATATCTTTGAAGGGATTTTCTGgtaaaacgacttttgagataattttatttttcatgttaatgtgatctatgattatataattccaattattaatgtcattactctttctttttggtgcctg----------