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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACATACAGCACCCAGATCTTCTCCTTAGCTGTCCTTTTGTCTAGCATGTTCATTTATAACCAGgttggggcaactcatggaatcctatatttagtcataattgagagtgcttttacttctccatattatttgatttttaacgattagtgaccagtttgtgggtccactaccgagcatacaaatttattccctcttctctcttgtctag

Basic information

species Glycine max
transcript GLYMA13G30780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30780.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 3
GGAACATACAGCACCCAGATCTTCTCCTTAGCTGTCCTTTTGTCTAGCATGTTCATTTATAACCAGgttggggcaactcatg---gaatcctatat-----ttagtcata--attgagagtgcttttacttctccatattatttgattt--ttaacgattagtgaccagtttgtgggtccactaccgagcatacaaatttattccctcttctctcttgtctag----------------------------------
|||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || |||||||||||  || |  |||    | |  |  |      || ||  |   ||| ||    |  || ||| |   |   ||||||| |  ||   | ||  |   ||   |  |  | || |    | |||    ||  ||||  |  | |   || |  |                                   
GGAACATACAGCACACAGATTTTCTCCTTGGCTGTCCTTTTATCTAGTATGTTCATATACAACCAGgttggtacatcatatgctcaagttgtggacaaggattggttgtgggatttagtagacagtttctttttattgaaatttgatctattttgtgttttctcctcacaatcagcatgcattgtgtatcatgtccataaattctgttgtatgggttcttgattcttctgcctatttacgttcttccttccattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208126830|gb|GD926074.1|GD926074
EST:     AGATCTTCTCCTTAGCTGTCCTTTTGTCTAGCATGTTCATTTATAACCAG                         ATGGGTGGTATTGATGAGGCTGCCCTTGAT
genomic: AGATCTTCTCCTTAGCTGTCCTTTTGTCTAGCATGTTCATTTATAACCAGgttggggcaa ... tcttgtctagATGGGTGGTATTGATGAGGCTGCCCTTGAT