Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcacatttttatttttcactcctcgtgttcaaatctgtcacaattcacaaacgtgaaagcttaatttttcttttttcag

Basic information

species Glycine max
transcript GLYMA13G27600.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G27600.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G21810.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcacatttttatttttcactcctc------gtgttcaaatctgtcacaattcac----aaacgtgaaagcttaatttttcttttttcag---
|||  | ||||| ||||||||  |||| || |||||||||||||| || |  || ||| | ||||| || ||||| ||||| |||||||| || |||||||||| |   |||| |   |  | ||  |        |  ||||||   |   ||||||     | ||     |    | |||| || | ||| |   
TGTTCTAACTGGTATTGTTCTCATTGGCGGAATGATACCTTATTTGTCTGTTTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGgtaaattctatttctcaataccgctatttttacgaatactcaaatgattttgaattcatctcaagaccatctataacacttttcctatgttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308645|gb|FG999726.1|FG999726
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|192308646|gb|FG999727.1|FG999727
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|209699836|gb|BW661133.1|BW661133
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|17963180|gb|BM269932.1|BM269932
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|192327521|gb|FK018197.1|FK018197
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|298194426|gb|HO041074.1|HO041074
EST:     AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|208053906|gb|GD853147.1|GD853147
EST:     CAAAAATAATATTCCTTAGCAACTCTATTTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: CAAAAATAATATTCCTTAGCAACTC-A-TTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|298181034|gb|HO022473.1|HO022473
EST:     AGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|192319097|gb|FK010633.1|FK010633
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|192319098|gb|FK010634.1|FK010634
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|192305754|gb|FG995710.1|FG995710
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|51336889|gb|CO980755.1|CO980755
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
EST: gi|192294844|gb|FG987533.1|FG987533
EST:     AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATG                         GTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT
genomic: AGTCGTTCGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGgtaagtcaca ... cttttttcagGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGT