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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACATACAGCACCCAGATATTCTCACTGGCAGTTCTTTTGTCTAGCATGTTCATTTATAACCAGgttggcacaaccttacttatatgtgtttcttgggttttagatgtcatgatcaatttgcgagtttgttatagagcaatgcgtgaaactttattccttcttctcctcccagcttttgtgaatttcttgctgcaattggaacactgatgctattttttttgctcag

Basic information

species Glycine max
transcript GLYMA13G24260.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24260.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G46070.1 (Arabidopsis thaliana), 5'ss of exon 3
GGCACATACAGCACCCAGATATTCTCACTGGCAGTTCTTTTGTCTAGCATGTTCATTTATAACCAGgttggcacaacctt-acttatatgtgtttcttgggttttagatgtcatgatcaatttgcgagtttgttatagagcaatgcgtgaaactttattccttcttctcctcccagcttttgtgaatttcttgctgcaattggaacactgatgctattttttttgctcag
|| || |||||||| || ||||||||| | || ||||||||||| ||||||||| | ||||| |||||| | | ||  || | ||  |    |   ||  | |||   ||  || ||    || |    ||||  | ||   |||  |     ||| ||  |   | ||                                                             
GGTACCTACAGCACTCAAATATTCTCATTAGCTGTTCTTTTGTCAAGCATGTTCGTGTATAATCAGgtttgaaaaattttcagtttgaaacttaatttaagctttttgtgatattat----tttcacacttgt-gttgactgatgttt----ttttgttggtatgtgtcag-----------------------------------------------------------

upper sequence: GLYMA13G24260.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 3
GGCACATACAGCACCCAGATATTCTCACTGGCAGTTCTTTTGTCTAGCATGTTCATTTATAACCAGgttggcacaaccttacttatatgtgtttcttgggttttagatgtcatgatcaatttgcgagtttgttatagagcaatgcgtgaaactttattccttcttctc-ctcccagctt---ttgtgaatttcttgctgcaatt--ggaacactgatgct-attttttttgctcag----------------------
|| ||||||||||| ||||| |||||  |||| || ||||| ||||| |||||||| || ||||||||||| |||  | ||     | ||  |      |  || | |||     | | |   |   ||  || ||  | |||  |    | ||| |   |||| ||| |   |||| |   ||||| ||    | |   ||||  |    |  | | ||   || || |||  |                       
GGAACATACAGCACACAGATTTTCTCCTTGGCTGTCCTTTTATCTAGTATGTTCATATACAACCAGgttggtaca-tcatatgctcaagttgtggacaaggattggttgtgggatttagtagacagtttctttttattgaaatttgatctattttgtgttttctcctcacaatcagcatgcattgtgtatcatgtccataaattctgttgtatgggttcttgattcttctgcctatttacgttcttccttccattcag