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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTCGAGGTTGCCCTTGATACAAGGGCCTTCTTTTGTTTATCTGGCCCCGGTGTTGGCGATCATCAACTCCCCCGAGTTTCAAGGATTAAATGCAAATgtgtgtttttcttctcatttcttcgtgttttggatgatgtttctgttgttagttatttgtgagatgtcatgggcttttgtattatgtatattgtgaggtttttgatggggtaagtgaaactaagactgatgatgaaaattttttgtatcaattttcag

Basic information

species Glycine max
transcript GLYMA12G30670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 3
TGGGTCGAGGTTGCCCTTGATACAAGGGCCTTCTTTTGTTTATCTGGCCCCGGTGTTGGCGATCATCAACTCCCCCGAGTTTCAAGGATTAAATGCAAATgtgtgtttttcttctcatttcttcgtgttttggatgatgtttctgttgttagttatttgtgagatgtcatgggcttttgtattatgt-atattgtgaggtttttgatggggtaagtgaaactaagactgatgatgaaaattttttgtatcaattttcag
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TGGCACGAGGTTGCCCTTGATACAGGGTCCTTCTTTTGTTTATTTGGCTCCAGCTCTTGCGATAATCAACTCTCCTGAGTTCCAAGGATTGAATGGAAATgtatgttt--ctagtgatatatgtatttatgtggctacattcatga-gatagtgtattgtc--cttttgctggttggt-tactatgtgatcctatccattccttga-----------------------------------------------------