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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAGgttaggtcactatttggttcagaatgaggatttttctgttttctttttttttttttttatttatgcctttgaaataagaagtgcgagtgttgtctag

Basic information

species Glycine max
transcript GLYMA12G29750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29750.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 3
GTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAGgttaggtcactatttggttcagaatgaggatttttctgttttctttttttttttttttatttatgcctttgaaataagaagtgcgagtgttgtctag
||||||||||| |||||||| ||||| ||||| || |||||||||||  | |||||   |  ||| | | ||| | | |  ||| ||||| || |    |||   | |    ||   | | | ||||||   || | |   ||   |    
GTGTTCTTCATTTTCACTCTTTATAATACTTCCAACCACAATGATCAACTTAAGgtactgcaactttctcgttaaaatt--ggaattttcagtctaaagtttacatgt----ataagttcttatgaaatctaaatttcatatgacatag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601385|gb|DB956691.1|DB956691
EST:     TCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAG                         TTTGGAGCAAGCCGTCCTGAAGAAGCGGCGAGGTGGATTCAGTCCTTTCAT
genomic: TCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAGgttaggtcac ... tgttgtctagTTTGGAGCAAGCCGTCCTGAAGAAGCGGCGAGGTGGATTCAGTCCTTTCAT
EST: gi|209722675|gb|BW654682.1|BW654682
EST:     TCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAG                         TTTGGAGCAAGCCGTCC
genomic: TCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAGgttaggtcac ... tgttgtctagTTTGGAGCAAGCCGTCC
EST: gi|209705115|gb|BW653338.1|BW653338
EST:     TCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAG                         TTTGGAGCAAGCCGTCCTGAAGAAGCGGCGAGGTGGATTCAGTCCTTTCAT
genomic: TCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAGgttaggtcac ... tgttgtctagTTTGGAGCAAGCCGTCCTGAAGAAGCGGCGAGGTGGATTCAGTCCTTTCAT