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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGTTCGGGGATTCACTGCAATAGGAACTGGAGGGGAGGACTTCGTTCAAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattcatacctcaacacactttcgtagaaacttggaaattggacttatttgttggaaaattgatgcactaatatatagtatgatctatgtatgat...

Basic information

species Glycine max
transcript GLYMA11G37030.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37030.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0010g03660.t01 (Vitis vinifera), 5'ss of exon 3
AACTGTTCGGGGATTCACTGCAATAGGAACTGGAGGGGAGGACTTCGTTCAAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattcatacctcaacacactttcgtagaaacttggaaattg---gacttatttgttggaaaattgatgcactaatatatagtatgatctatgtatgat
||| ||| | || || |||||||| ||||||||||| || || || || ||||| |||||||||||||| ||||| ||| | || || || || ||| ||||   ||            || |  ||  |    |||  ||  ||       ||||   |||  | ||  | | |  |||| |   || | |     | | | 
AACAGTTAGAGGGTTTACTGCAATTGGAACTGGAGGTGACGATTTTGTGCAAGCTATGGTTGTTGCTGTTGAATCTGTACTTCAACATCCAATACCTGAGgtacatagatcacttgttgcaaatgtttttgttgactaagatgttttctagtttatgcattgatacatccaagga--aataaactttaaggtgaccatttaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299371|gb|FG992519.1|FG992519
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|298176409|gb|HO026644.1|HO026644
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGG-CAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|31307757|gb|CD392960.1|CD392960
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|151410078|gb|EV279886.1|EV279886
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|298169794|gb|HO021154.1|HO021154
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|16996061|gb|BM085433.1|BM085433
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|31464813|gb|CD406826.1|CD406826
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|298191860|gb|HO035942.1|HO035942
EST:     AAACCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|298177173|gb|HO027068.1|HO027068
EST:     AAGTCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|208320390|gb|GE122979.1|GE122979
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATA
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATA
EST: gi|151397727|gb|EV267600.1|EV267600
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|207765810|gb|GD735129.1|GD735129
EST:     TCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: TCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
EST: gi|19346665|gb|BM891545.1|BM891545
EST:     AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAG                         GGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC
genomic: AAGCCATGGTTGTTGCTGTGGAATCCGTAATCCAGCAGCCCATTCCTCAGgtgtgtattc ... tatgttacagGGACGTGTGAAGCAGAAGTTATCAGCAAGGGGCAAATATGTATCCGTAAAC