1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttcctttccccccaatccctacttgggtaacatttgtcttctggtaatgtgcagccaaggttgtcatcagtgaataggattaggaatgaatag...
species | Glycine max |
transcript | GLYMA11G19820.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|298181314|gb|HO022753.1|HO022753
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGNNNNNNNCGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCEST: gi|9902786|gb|BE611754.1|BE611754
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAA-CGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGC
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|58024346|gb|CX711087.1|CX711087
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|58017919|gb|CX704661.1|CX704661
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|31561330|gb|CD487168.1|CD487168
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGACCGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|7686157|gb|AW756805.1|AW756805
genomic: GGAAATGAA-GATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|120494977|gb|EH223144.1|EH223144
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|31461410|gb|CD403438.1|CD403438
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|10847510|gb|BF071557.1|BF071557
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|192312931|gb|FK005487.1|FK005487
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|298192960|gb|HO033394.1|HO033394
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|298182190|gb|HO026365.1|HO026365
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|207699160|gb|GD679382.1|GD679382
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|298169407|gb|HO020767.1|HO020767
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|298174319|gb|HO017655.1|HO017655
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|7692630|gb|AW760732.1|AW760732
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|10232731|gb|BE801619.1|BE801619
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|192329306|gb|FK020225.1|FK020225
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|5508879|gb|AI855437.1|AI855437
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|13479522|gb|BG508865.1|BG508865
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|208338534|gb|GE137792.1|GE137792
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTT-GAAACTGTTGGGGCTEST: gi|120529435|gb|EH257569.1|EH257569
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|151393442|gb|EV263317.1|EV263317
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGNNNNNNNCGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCEST: gi|5760324|gb|AI965751.1|AI965751
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAG-AAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGC
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|192323328|gb|FK018979.1|FK018979
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTATTGGGGCTEST: gi|10843800|gb|BF067055.1|BF067055
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|209725249|gb|BW672724.1|BW672724
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: CTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|298175487|gb|HO018198.1|HO018198
genomic: CTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|23063923|gb|BU578697.1|BU578697
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|120493743|gb|EH221910.1|EH221910
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGCCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCAAATTTTTGAAACTGTTGGGGCTEST: gi|31458412|gb|CD400440.1|CD400440
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|58015022|gb|CX701764.1|CX701764
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|298183049|gb|HO028312.1|HO028312
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|120493847|gb|EH222014.1|EH222014
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: AAGGAAATGAAGATAGAAGAAGAAAGGATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCAAATTTTTGAAACTGTTGGGGCTEST: gi|120493827|gb|EH221994.1|EH221994
genomic: AAGGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCAAATTTTTGAAACTGTTGGGGCTEST: gi|209725248|gb|BW672723.1|BW672723
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|298195310|gb|HO043838.1|HO043838
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|9899851|gb|BE608819.1|BE608819
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|10232284|gb|BE801172.1|BE801172
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTEST: gi|13181428|gb|BG352698.1|BG352698
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGACAAAACGG GTTAAAAGAAGAGGCACAGCAAACTTGCTCTAATTTTTGAAACTGTTGGGGEST: gi|31312456|gb|CD397659.1|CD397659
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGT-AAAAGAAGAGGCACAGCAA-CTTGCTCTAATTTTTGAAACTGTTGGGG
EST: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAACAAACGG GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttcctttccccccaatccctacttgggtaacatttgtcttctggtaatgtgcagccaaggttgtcatcagtgaataggattaggaatgaatag
- - TGAAGA
- - - - - - - AAGAAG
- - - - - - - - AAGAAA
- - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc